Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120059.Seq
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   121   6e-28
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    31   0.64 
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   3.4  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   3.4  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.9  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  121 bits (291), Expect = 6e-28
 Identities = 56/94 (59%), Positives = 68/94 (72%)
 Frame = +3

Query: 258 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 437
           GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DG
Sbjct: 84  GFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDG 143

Query: 438 RTIRYPDPLIKVNDSIQLDIATTKLWTSSSLSRG 539
           RTIRYPDP +KVND+I  +I+T K+  S     G
Sbjct: 144 RTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPG 177



 Score =  109 bits (263), Expect = 2e-24
 Identities = 48/74 (64%), Positives = 60/74 (81%)
 Frame = +2

Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
           +I D +KFE GNL  +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+FAT+++NVF+
Sbjct: 167 KITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFV 226

Query: 686 IGKGTKAYISLPRG 727
           IGKG KA +SLP G
Sbjct: 227 IGKGNKALVSLPTG 240



 Score =  101 bits (243), Expect = 4e-22
 Identities = 49/74 (66%), Positives = 56/74 (75%)
 Frame = +2

Query: 14  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES* 193
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E+ 
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 194 KL*NNAS*RLMGKL 235
           K+      R+ GK+
Sbjct: 62  KILTQRVVRVDGKV 75



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +1

Query: 193 KIVKQRLIKVDGKVRTDPTYP 255
           KI+ QR+++VDGKVRT   +P
Sbjct: 62  KILTQRVVRVDGKVRTCHKFP 82


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = +1

Query: 574 ACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 711
           A  HH    E      H  H G HGTH  H          GH G H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEH 509



 Score = 31.1 bits (67), Expect = 0.84
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +1

Query: 583 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 711
           HH    E      H  H G HGTH  H          GH G H
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEH 567



 Score = 31.1 bits (67), Expect = 0.84
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
 Frame = +1

Query: 553 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAA 720
           HG    G+ G H     T   L H  H G HGTH    H      H+   HE G H  A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGA 701



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +1

Query: 622 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVH 711
           H AH   HG H RH  E    H+   H G H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH 422



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = +1

Query: 583 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 711
           HHR   E        AH G HGTH  H  E   H+   H G H
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHH 442



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = +1

Query: 583 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 711
           HH    E      H  H G HGTH  H  E   H+   H G H
Sbjct: 502 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGEH--HHAPAHHGHH 542



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/44 (29%), Positives = 16/44 (36%)
 Frame = +1

Query: 580 GHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 711
           G H  P        H  H   HG H  H  ++  H+  GH   H
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKH 721



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/44 (31%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
 Frame = +1

Query: 583 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQG-HEGVH 711
           HH  P        H  H G HG H         H   G H G H
Sbjct: 509 HHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHH 552



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = +1

Query: 583 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 711
           HH  P           H G HG H  H          GH G H
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGH 673


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +3

Query: 324 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 455
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 541 LVYDHGRP*LGACGHHRVPRETSRLLRH 624
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 541 LVYDHGRP*LGACGHHRVPRETSRLLRH 624
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 481  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 317
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,285,779
Number of Sequences: 27780
Number of extensions: 410664
Number of successful extensions: 1150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)