Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120058.Seq
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    29   0.44 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   3.1  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    27   3.1  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   4.1  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    25   7.2  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.5  

>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +3

Query: 249 PHKRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNS 419
           PH+   ++  +LP++          IA  +  NK     R  +PS+ N  +V+N  S
Sbjct: 493 PHQDLAIASSLLPLYTNIGGAIGAAIASPIFSNKVPKYLREYLPSSINDTQVYNFYS 549


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 246  PPHKRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKER 356
            P H  F  +  ++ +F+++ N+   +IA H V N ++
Sbjct: 1741 PIHTNFDTNADIITLFEKEANEHPSSIALHFVYNVDK 1777


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 18/75 (24%), Positives = 33/75 (44%)
 Frame = -2

Query: 258 VYEVAVADKPSVVMIRVGRTR*LVCYARVERHDGRENAAVNSHLSRRHTHGH*RHIVAVI 79
           +YE    +   +V++ V + + +  Y ++  +D  E   + S LSRR      +HI    
Sbjct: 8   MYENRFPEVDELVVVNVRQIQEMGAYVKLLEYDNIEGMVLLSELSRRRIRSVQKHIRVGR 67

Query: 78  NMDHGNFMIEKEISY 34
           N       ++KE  Y
Sbjct: 68  NEVVVVLRVDKEKGY 82


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +1

Query: 103 MPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAY 216
           +P+G  P  +R N+C+ +     +     + P  P  Y
Sbjct: 155 VPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGY 192


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 429 AEQLIFHLIYNN-EEAVNVICDNLKYTEFHKRHATRYTQRLRNYKKHSRHHKPEHVLFAC 605
           AE + F ++ ++  ++V++  D  +  +FH +    Y+ R+  Y +  ++H P   L+  
Sbjct: 96  AENVQFEILSDDWTKSVHLQTD--RTVDFHSQGGIHYSTRIPKYGRDLKYHYPNCDLYLA 153

Query: 606 VA 611
            A
Sbjct: 154 AA 155


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
 Frame = +3

Query: 255 KRFKMS--KMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQ 428
           +RF+ S  K + P    +   FK TI+++   N+E  +K  L   ++ +    +    + 
Sbjct: 22  RRFQKSQKKSISPSSGSELPNFKTTISQN---NEE--VKTSLKEDSSKFHPSASAPIFVP 76

Query: 429 AEQLIFHLIYNNEEAVNVICDNLKYTEFH-KRHATRYTQRLRNYKKHSRHHKPEHV 593
              +  ++  NN    + I D +   +   ++HA    +R +N K+ S+H + + V
Sbjct: 77  TSSVQLNVSKNNGHKASDIVDAVSSKDEELRKHAKGEGKRSKNRKRSSKHSEKQAV 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,812
Number of Sequences: 5004
Number of extensions: 54254
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)