Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120058.Seq
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0770 + 5912412-5912476,5913759-5913779,5914015-5914638,591...    29   2.4  
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240...    29   3.2  
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14...    29   4.3  
04_04_0123 - 22923058-22923072,22923711-22923723,22924355-22926504     28   5.6  
05_03_0328 - 12468142-12468262,12468443-12468641,12468758-124689...    28   7.5  

>07_01_0770 +
           5912412-5912476,5913759-5913779,5914015-5914638,
           5915264-5915439,5915526-5916124
          Length = 494

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -3

Query: 635 TSKKRNSSRDTREQNVFGFVVSRMLLVVA 549
           +S  R  SRD R +N+FGF VS +L+ +A
Sbjct: 18  SSTTRFMSRDIRAKNIFGFSVSLILINLA 46


>07_03_1764 +
           29322683-29323387,29323809-29323889,29323968-29324072,
           29324453-29325382,29326728-29326856,29326953-29327042,
           29327237-29327293,29327362-29327394
          Length = 709

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 208 DAYHDDGWFICNSHLINVLKCQKWFCPF--STKTTI 309
           D+YHDDG  +C+ H  ++ K     CPF  ST+TT+
Sbjct: 325 DSYHDDGASLCSKH-HDIFK-----CPFDKSTQTTL 354


>01_01_0020 +
           147147-147313,148450-148548,148634-148742,148856-148927,
           149056-149061,150811-150915,151048-151539,151629-152025,
           152178-153646,154010-154450,154543-155214
          Length = 1342

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +3

Query: 231 VYLQQPPHKRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSAT 389
           V  ++PP K+F+ +K+   + D+DD+Q ++  +  +       I+R +I  AT
Sbjct: 137 VLAERPPEKKFEWAKVTSSMEDDDDDQ-RLLHSLGVTSADIHDIERRIISQAT 188


>04_04_0123 - 22923058-22923072,22923711-22923723,22924355-22926504
          Length = 725

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 228 MVYLQQPPHKRFKMSKMVLPIFDEDDNQFKMTIARHLVG-NKERGIKRILIPSATNY 395
           ++Y   PP  R + +K+    F+E DN++ + +A   VG      I+R++  S   Y
Sbjct: 396 VIYGALPPETRRQQAKL----FNEQDNEYDVLVASDAVGMGLNLNIRRVVFYSLAKY 448


>05_03_0328 -
           12468142-12468262,12468443-12468641,12468758-12468974,
           12469896-12469994,12470843-12470899,12470943-12472577
          Length = 775

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 204 ARRVS*RRMVY---LQQPPHKRFKMSKMVLPIFDEDDNQFKMTIARHLVGN 347
           A+ V   R VY   L+  PHK+F  +KM L     +  Q  +  AR ++GN
Sbjct: 413 AKDVERTREVYSECLKLVPHKKFTFAKMWLMAAQFEIRQRNLKAARQILGN 463


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,161,025
Number of Sequences: 37544
Number of extensions: 340066
Number of successful extensions: 699
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)