Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120058.Seq
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016685-1|AAG24144.2|  300|Caenorhabditis elegans Hypothetical ...    31   0.94 
Z96047-6|CAB09416.1|  922|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF024614-1|AAB97161.1|  922|Caenorhabditis elegans ADAM 10 protein.    29   3.8  
Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U12966-3|AAA20614.1|  128|Caenorhabditis elegans Temporarily ass...    28   6.7  
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    28   6.7  
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical ...    27   8.8  

>AF016685-1|AAG24144.2|  300|Caenorhabditis elegans Hypothetical
           protein F59E11.8 protein.
          Length = 300

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 465 EEAVNVICDNLKYTEFHKRHATRYTQRLRNYKKHSRHHK 581
           E  +N++ DNL      ++ ATRY+ RL    K S+ +K
Sbjct: 227 ERLLNILADNLHEYYVEQKDATRYSYRLTKILKISQQYK 265


>Z96047-6|CAB09416.1|  922|Caenorhabditis elegans Hypothetical
           protein DY3.7 protein.
          Length = 922

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 414 NSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEFHKRH-ATRYTQRLRNYKKHSRHHK 581
           N +     LIF L + N   +N   DN +   +   H A + T+R R+    + H++
Sbjct: 7   NRLQLVVTLIFCLFFENVNGLNNFIDNFETLNYRATHVANQVTRRKRSIDSAASHYQ 63


>Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical
           protein C32H11.4 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 109 VGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYH 219
           +GM P  + + + +FA+  S D    + SP  P+ Y+
Sbjct: 146 IGMQPHVLNITQDLFAADFSSDKVALFVSPADPNDYY 182


>AF024614-1|AAB97161.1|  922|Caenorhabditis elegans ADAM 10 protein.
          Length = 922

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 414 NSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEFHKRH-ATRYTQRLRNYKKHSRHHK 581
           N +     LIF L + N   +N   DN +   +   H A + T+R R+    + H++
Sbjct: 7   NRLQLVVTLIFCLFFENVNGLNNFIDNFETLNYRATHVANQVTRRKRSIDSAASHYQ 63


>Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical
           protein F39B2.1 protein.
          Length = 564

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 528 TRYTQRLRNYKKHSRHHKPEHVLFACVARRIAFFRRDQ 641
           T+      N ++H+RHH  E VL AC      F RRD+
Sbjct: 300 TQVADSKANLRRHARHHSGEKVL-ACPFCARFFSRRDK 336


>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
 Frame = +1

Query: 85  GNNMALMPVGMAPRQMRVNRCIFASIVSFDAC-ITYKSPCSPDAYHDDGW----FICNS- 246
           GN+M +  V    R   V     AS+ + D C I +  P     Y    W    F C S 
Sbjct: 89  GNSMVIFVVNRFKRMRNVTNIFLASLSTADLCLIWFCVPIMFMKYMSHTWSMGRFACYSV 148

Query: 247 HLINVLKCQKWFCPFSTKTTIN 312
           H I    C   FC   T T I+
Sbjct: 149 HYIQQFTC---FCSVLTMTMIS 167


>U12966-3|AAA20614.1|  128|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 174 protein.
          Length = 128

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 549 RNYKKHSRHHKPEHVLFA 602
           +++KKH  H +PEHV +A
Sbjct: 72  KDHKKHMSHERPEHVEYA 89


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
 Frame = +1

Query: 85  GNNMALMPVGMAPRQMRVNRCIFASIVSFDAC-ITYKSPCSPDAYHDDGW----FICNS- 246
           GN+M +  V    R   V     AS+ + D C I +  P     Y    W    F C S 
Sbjct: 89  GNSMVIFVVNRFKRMRNVTNIFLASLSTADLCLIWFCVPIMFMKYMSHTWSMGRFACYSV 148

Query: 247 HLINVLKCQKWFCPFSTKTTIN 312
           H I    C   FC   T T I+
Sbjct: 149 HYIQQFTC---FCSVLTMTMIS 167


>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
            F26H11.2c protein.
          Length = 2266

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/48 (25%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
 Frame = +3

Query: 222  RRMV-YLQQPPH---KRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKE 353
            RR++ + + PP+   +R++M   ++P++DE + + +  ++R+  G+ E
Sbjct: 1128 RRIIRHKEMPPYGQYERYEMEIEIIPLYDEPEEEDESWLSRNRGGSSE 1175


>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical protein
            F26H11.2b protein.
          Length = 1693

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/48 (25%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
 Frame = +3

Query: 222  RRMV-YLQQPPH---KRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKE 353
            RR++ + + PP+   +R++M   ++P++DE + + +  ++R+  G+ E
Sbjct: 1128 RRIIRHKEMPPYGQYERYEMEIEIIPLYDEPEEEDESWLSRNRGGSSE 1175


>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical protein
            F26H11.2a protein.
          Length = 1691

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/48 (25%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
 Frame = +3

Query: 222  RRMV-YLQQPPH---KRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKE 353
            RR++ + + PP+   +R++M   ++P++DE + + +  ++R+  G+ E
Sbjct: 1128 RRIIRHKEMPPYGQYERYEMEIEIIPLYDEPEEEDESWLSRNRGGSSE 1175


>AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical
           protein C17E7.7 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 393 YQEV--FNLNSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEFHKRHATR 533
           YQE   F +N   + ++ +  +    ++ ++ I D L+Y + H+R   R
Sbjct: 116 YQECLKFGMNYAFRKQKRLLEIRNKKDDELDAIIDGLRYLDNHRRETLR 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,033,011
Number of Sequences: 27780
Number of extensions: 310339
Number of successful extensions: 784
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)