Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120058.Seq
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putativ...    30   1.5  
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ...    30   1.5  
At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein...    29   2.7  
At2g36400.1 68415.m04467 expressed protein nearly identical to t...    29   3.6  
At3g29265.1 68416.m03673 hypothetical protein                          28   4.7  
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot...    28   4.7  

>At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 361

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 366 RILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVIC 488
           R ++ + T+Y + FNL S   A + + HLI + +E + V+C
Sbjct: 147 RKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEI-VVC 186


>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 494

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 366 RILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVIC 488
           R ++ + T+Y + FNL S   A + + HLI + +E + V+C
Sbjct: 147 RKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEI-VVC 186


>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 595

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 23/112 (20%), Positives = 50/112 (44%)
 Frame = +3

Query: 255 KRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAE 434
           KR K+ K     +D D   F+ + +     ++ R  K +  PSA+   EV++  +  + +
Sbjct: 355 KRKKLKKKSKKQYDSDSLSFEGSGSDSYRLSRRRHTKHV-DPSASLKSEVYHQGNSHREK 413

Query: 435 QLIFHLIYNNEEAVNVICDNLKYTEFHKRHATRYTQRLRNYKKHSRHHKPEH 590
                     +E V+    +   +++++ +++R  +   +YK H R  K  H
Sbjct: 414 HYYDEKHQKRKEIVDRPSASSDDSDYYRSNSSRKKRSEDDYKSHHRERKQVH 465


>At2g36400.1 68415.m04467 expressed protein nearly identical to
           transcription activator GRL3 [Arabidopsis thaliana]
           GI:21539884 (unpublished); supporting cDNA
           gi|21539883|gb|AY102636.1|
          Length = 398

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +1

Query: 37  RDFFLNHKIAVVHIYNGNNMALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAY 216
           RD F  HK    H++ G N +  PV   P  +       AS V+  A  T  +  S  A+
Sbjct: 162 RDVFAGHKYCERHMHRGRNRSRKPV-ETPTTVNATATSMASSVAAAATTTTATTTSTFAF 220

Query: 217 HDDG 228
              G
Sbjct: 221 GGGG 224


>At3g29265.1 68416.m03673 hypothetical protein
          Length = 236

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 501 YTEFHKRHATRYTQ-RLRNYKKHS 569
           YT FHK H T   Q RLR Y K S
Sbjct: 83  YTTFHKNHITLQQQYRLRGYTKFS 106


>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487; contains
           prenyl group binding site (CAAX box) Prosite:PS00294
          Length = 769

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 549 RNYKKHSRHHKPEHVLFACVARR 617
           +++K+H RHHK + +   CV +R
Sbjct: 340 KSHKRHGRHHKSDCMCAICVLKR 362


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,911,682
Number of Sequences: 28952
Number of extensions: 275117
Number of successful extensions: 612
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)