Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120056.Seq
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 135 7e-33
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 30 0.29
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy... 30 0.39
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.1
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 27 2.7
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 4.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.3
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 6.3
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 26 6.3
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 6.3
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 25 8.4
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 8.4
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 135 bits (326), Expect = 7e-33
Identities = 58/84 (69%), Positives = 72/84 (85%)
Frame = +2
Query: 2 GHTDYKYLRWQVIDTPGILDHPLEERNVIEMQAVTALAHLRAAILYFIDPSEQCGHSIED 181
GH DYKYLRWQVIDTPGILDHPLE+ N IEMQ++TA+AHLR+A+LYF+D SE CG+S+
Sbjct: 208 GHFDYKYLRWQVIDTPGILDHPLEQMNTIEMQSITAMAHLRSAVLYFMDLSEMCGYSVAA 267
Query: 182 QISLFESIKPLFTSKPLIVVLNKM 253
Q+ L+ SIKPLF +K I+VLNK+
Sbjct: 268 QVKLYHSIKPLFANKVTILVLNKI 291
Score = 42.7 bits (96), Expect = 5e-05
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +1
Query: 370 VPVMRMSTVTEEGVQEVKIEACERLLGHRVTEKMRTKKVDGILNRL 507
V V++ S V + GV +V+ ACE LL RV +K++ +V+ +LNR+
Sbjct: 316 VKVVQTSCVQDIGVMDVRTTACEALLAARVEQKLKGSRVNNVLNRI 361
Score = 37.1 bits (82), Expect = 0.003
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 528 RDDKPRPPVLPPSVLAKKEKQAEKENRKRKLERDIEVELGDD--YVLDLKKNYTEIPEDE 701
RD+ RP +P SV ++ A NR R L RDIE G Y ++L+ Y
Sbjct: 369 RDEVARPACIPDSVKTRRAYDANDPNR-RILARDIEAANGGAGVYNVELRDKYILQDPSW 427
Query: 702 RYDVIPEI 725
+YD +PE+
Sbjct: 428 KYDRMPEL 435
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 30.3 bits (65), Expect = 0.29
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +3
Query: 579 KEKQAEKENRKRKLERDIEVELGDDYVLDLKKNYTEIPEDERYDVIPEI 725
KEK EKEN LE +++ DY LKK T + E+E+ +I EI
Sbjct: 406 KEKYREKENNLELLETNLKTH-HKDYKHALKKRITAL-EEEKNRLIKEI 452
>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 29.9 bits (64), Expect = 0.39
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Frame = +2
Query: 23 LRWQVIDTPGILDHPLEERNVIEMQAVTALAHLRAAILYFID--PSEQCGHS-IEDQISL 193
L +Q + ++DHP +N + M+ +TAL +L L + +E G+S + D IS
Sbjct: 53 LSYQFVFDKSLMDHPKFLKNQVFMEVLTALQNLPGMALLTVPWFLAELHGYSYLYDNISD 112
Query: 194 FESIKPLFTSKPLIVVLN 247
+ +K S PL V+ +
Sbjct: 113 Y-GLKYFLCSLPLFVMFS 129
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 2.1
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = -3
Query: 446 SSLSQASILTSCTPSSVTVDIRITGTTDRSEFESALTRFPLEHVSVRSSSNCFLLRDSSS 267
SS S +S +S + SS + + IT +T S S+ + S SSS+ F+ SSS
Sbjct: 188 SSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSS 247
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 473 RIFSVTRCPSSLSQASI-LTSCTPSSVTVDIRITGTTDRSEFESALTRFPLEHV 315
++FS C +S I L S PS+ +DIR + + D ++ S+ + P V
Sbjct: 470 KVFSCITCHNSPVYLVIELFSIGPSASVIDIRFSSSDDSIKYTSSYSPMPFLEV 523
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 49 WNLGSSIGRTQCYRNASGHS-FGSSQSCHTIL 141
W L S IG + Y NAS + FG + CH L
Sbjct: 1641 WTLDSDIGEIE-YTNASKRNYFGVPEDCHDSL 1671
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 6.3
Identities = 22/80 (27%), Positives = 38/80 (47%)
Frame = -3
Query: 488 STFFVRIFSVTRCPSSLSQASILTSCTPSSVTVDIRITGTTDRSEFESALTRFPLEHVSV 309
S+ ++ SV SS S +S T + S T I T ++ S S+L+ +
Sbjct: 206 SSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSST-SSSLSSSSSSSTAS 264
Query: 308 RSSSNCFLLRDSSSGLTTPS 249
SSS+ ++ SSS ++P+
Sbjct: 265 SSSSSSSIISSSSSSSSSPT 284
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 537 KPRPPVLPPSVLAKKEKQAEKENRKRKLERDIEVELGDDYVLDLKKNYTEIPEDER 704
K + P SV+ + K +KEN LER ++ D +L +N + E ER
Sbjct: 261 KEKQPEEEVSVVGDELKSFDKENNDEHLERVTNDKIADASMLQKAEN--NVSEQER 314
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 455 RCPSSLSQ--ASILTSCTPSSVTVDIRITGTTDRSEFES 345
+CPS A I T C PS+V ++++ D EF S
Sbjct: 208 KCPSGHPPWPAGICTKCQPSTVMLNLQPFRVIDHIEFAS 246
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 570 LAKKEKQAEKENRKRKLERDIEVE--LGDDYVLDLKKNYTEIPE 695
+ KK K E+E R+R+ ER E + G + + ++ K+ T++ E
Sbjct: 183 IRKKWKVIEREVRRRRAERAAEAQRVAGKEQLANILKHSTDLLE 226
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 464 SVTRCPSSLSQASILTSC 411
SV+ C S L +A+ILT+C
Sbjct: 207 SVSACSSQLERANILTTC 224
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 173 IEDQISLFESIKPLFTSKPLIVVLNKMVWSNLKSCL 280
+ D+ + K LFT + + + L K+ S++ SCL
Sbjct: 281 VADESGMLYKFKALFTDETVSMELEKLGESSIASCL 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,496
Number of Sequences: 5004
Number of extensions: 45842
Number of successful extensions: 217
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -