Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120056.Seq
         (730 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          29   0.19 
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    24   5.5  
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    23   9.7  

>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 28.7 bits (61), Expect = 0.19
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 155 EQCGHSIEDQISLFESIKPLFTSKPLIVVLNKMVWSNLKS 274
           E+    I D I++F  IK + + KPL+ ++    + NLKS
Sbjct: 135 EEAPRRIRDVINVFHHIKQVRSQKPLLPMILDQHYINLKS 174


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 335 RFPLEHVSVRSSSNCFL 285
           R  + H+S+ SSS+CFL
Sbjct: 178 RHYVPHISLNSSSSCFL 194


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 255 TILFNTTIRGLLVNKGFILSNSDIWSSILW 166
           TIL   TI  ++V     +   DIW+S LW
Sbjct: 579 TILGPGTIFLMMVGALVAVFRIDIWTSFLW 608


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 605,984
Number of Sequences: 2352
Number of extensions: 11135
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)