Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120056.Seq
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   1.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.2  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   6.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   6.8  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   9.0  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 46  PWNLGSSIGRTQCYRNASGHSFGSSQSC 129
           P++  S IGR +  +  S + +GSS  C
Sbjct: 143 PYSPNSKIGRDELSQPGSLNGYGSSDGC 170


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 71  EERNVIEMQAVTALAHLRAAILYFIDPSEQ 160
           EE    E      L HLRAA+L   +PS +
Sbjct: 53  EETEDAEDTQTLNLKHLRAAVLVLTNPSNE 82


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 531  DDKPRPPVLPPSVLA 575
            ++ P PP LPP V++
Sbjct: 1106 ENAPLPPALPPQVVS 1120


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 579 KEKQAEKENRKRKLERDIEVELGDDYVLDLKKNY 680
           KE+  +++ R+R  E  I   L ++Y      NY
Sbjct: 64  KERSRDRKERERSKEPKIISSLSNNYKYSNYNNY 97


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 579 KEKQAEKENRKRKLERDIEVELGDDYVLDLKKNY 680
           KE+  +++ R+R  E  I   L ++Y      NY
Sbjct: 297 KERSRDRKERERSKEPKIISSLSNNYKYSNYNNY 330


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 579 KEKQAEKENRKRKLERDIEVELGDDYVLDLKKNY 680
           KE+  ++  R+R  E  I   L ++Y      NY
Sbjct: 64  KERSRDRRERERSKEPKIVSSLSNNYNYSNYNNY 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,806
Number of Sequences: 438
Number of extensions: 3181
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)