Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120054.Seq
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 31 0.21
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 29 0.64
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 29 0.85
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 28 1.5
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 27 2.0
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 3.4
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 3.4
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 4.5
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 4.5
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 26 4.5
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 26 4.5
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 6.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 6.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 6.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 6.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 6.0
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 26 6.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 6.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 6.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 6.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 6.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 6.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 6.0
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 25 7.9
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 7.9
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 25 7.9
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 25 7.9
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 30.7 bits (66), Expect = 0.21
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Frame = +2
Query: 359 RAVQYPADKRKHPVLCVTRDGTTFTAITGQ----KTYVESQKHKRNIDAANIVVRISGLI 526
+A+QY HP L +T AI Q + + KH + A ++R GL
Sbjct: 1658 QALQYMRKLCNHPALILTEKHPKRNAIVKQLAKENSGLHDLKHAPKLTALGQLLRDCGLG 1717
Query: 527 LPSIGTTPLIGYKVNVASEHLVLI 598
S+ + + N SEH VLI
Sbjct: 1718 NSSVNSNGIDSALTNAVSEHRVLI 1741
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 29.1 bits (62), Expect = 0.64
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 280 HHFIFSLHSS*NPVYMRLRSVITRVTCKSLASICLSLIAMMRSI 149
HHF+F+ P Y++ S++ T KS I LS ++ S+
Sbjct: 460 HHFLFNTFVDQIPSYLKNHSILDETTRKSFYRIILSSNSLSTSL 503
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 28.7 bits (61), Expect = 0.85
Identities = 26/116 (22%), Positives = 48/116 (41%)
Frame = +2
Query: 227 QPHVHRVSGTMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDRAVQYPADKRKHPVLC 406
QPH+ +V G RK+ + K L++ ++ N++ K ++ +A+ DK VL
Sbjct: 586 QPHMQKVYGNTLRKEAGISK---LIKQATSEKGNILPKTVETHMKALTTSVDK----VLD 638
Query: 407 VTRDGTTFTAITGQKTYVESQKHKRNIDAANIVVRISGLILPSIGTTPLIGYKVNV 574
T + T E K + N + I L P + ++ YK+ +
Sbjct: 639 QTAEALEEFVNTAPPKVQELLKGTESNLRKNAQLAILKLFAPQLSSSTHFDYKLEI 694
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Frame = -1
Query: 555 ISGVVPIDGRIRPDILTTMLAASMLRLCFWLSTYVFWPVIAVNVVPSRVTHSTGCLR--L 382
I P++ I P + TT L + + +T P++ + P+ VT +T + +
Sbjct: 245 IRTTTPMEAMITPTVETTTLPTAAMTTPVEETTTT--PMVETMITPTVVTTTTPMVETMI 302
Query: 381 SAGY*TARSDKSIILAIKLETCVSLTCNNSS 289
+ T +++A+ +ET +++ NN S
Sbjct: 303 TPTVVTTTPMVILVMAVVMETTINIVGNNDS 333
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 538 WNNATDRLQSKRSKRTFSFDSLEEAQQF 621
W+ A+D+++ R FDS E AQ+F
Sbjct: 23 WDEASDQVKGYGGNRYKKFDSYEAAQEF 50
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 504 TMLAASMLRLCFWLSTYVFWPVIAVNVV 421
TM+ LR +WLST +F P++ V+
Sbjct: 706 TMMGLMSLRKAYWLSTVIF-PLLCFTVI 732
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 136 LKSSSVFCATSPCSAFVCSVNVAISLVTNCLFFSSCCLIAGSYLP 2
+ S V A+SP S S++V S N F+ ++ +YLP
Sbjct: 216 MPESLVMDASSPLSDMSMSIDVGESAANNVFAFNQKDMVDSTYLP 260
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 94 RCKGWWRKKPRN-FLKSKSLSNASSQLRTSRL 186
+ +G WR N F SKS+SN S+ L ++ L
Sbjct: 1772 KTRGVWRDLSANQFKNSKSISNVSTHLASNNL 1803
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -1
Query: 471 FWLSTYVFWPVIAVNVVPSRVTHSTGCLRLSAGY*TARSDKSIILAIKLETCVSLTCNNS 292
FW TY+F ++ + + + C + Y S L+ + +C+ + CN+S
Sbjct: 226 FWERTYMFLELLPLQSI------TAACESILKDYLLNLVKTSESLSSQQMSCLRICCNSS 279
Query: 291 SFLCIISSF 265
SF SF
Sbjct: 280 SFWSAADSF 288
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 26.2 bits (55), Expect = 4.5
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Frame = -3
Query: 385 LVRGVLNRAIRQIYHFGN*IGDLRVFNLQQLVFFVHHFIFSLHSS*NPVYMRLRSVITRV 206
++R +LNR H GN +GD F ++ +VH I + N + + V
Sbjct: 597 IIRHILNR------HLGNNVGDRVSFRNEKFRVYVHSKISPNTDTYNEYVPVMEAYNEAV 650
Query: 205 -TCKSLASICLSLIAMMRSINSCFLKSSSV-FCATSPCS 95
+ +L+ I LS+ ++ + S SSSV F +S C+
Sbjct: 651 KSLINLSDIPLSIAEILPADESLRYSSSSVPFYESSTCA 689
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 429 NVVPSRVTHSTGCLRLSAGY*TARSDKSIILAI 331
+V+P HS C R S+ Y A +KSI + I
Sbjct: 222 SVIPDSSFHSVACYRASSHYKEAPVEKSIDIDI 254
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 242 RVSGTMQRKDEMM-HKKDELLQVKDTQVSNLIAK 340
RV +Q KD ++ + KD++L DTQ++ I K
Sbjct: 884 RVEENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 242 RVSGTMQRKDEMM-HKKDELLQVKDTQVSNLIAK 340
RV +Q KD ++ + KD++L DTQ++ I K
Sbjct: 884 RVEENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 242 RVSGTMQRKDEMM-HKKDELLQVKDTQVSNLIAK 340
RV +Q KD ++ + KD++L DTQ++ I K
Sbjct: 884 RVEENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 242 RVSGTMQRKDEMM-HKKDELLQVKDTQVSNLIAK 340
RV +Q KD ++ + KD++L DTQ++ I K
Sbjct: 884 RVEENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 242 RVSGTMQRKDEMM-HKKDELLQVKDTQVSNLIAK 340
RV +Q KD ++ + KD++L DTQ++ I K
Sbjct: 884 RVEENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +3
Query: 69 ATFTEHTNALQGLVAQKTEELFKKQEFIERIIAIKDK-QIEAKDLQVTRVMTDLNRMYTG 245
A+ N + Q T+ L I + + D + + + ++ +LN + G
Sbjct: 305 ASAISQNNLAYAVATQDTDVLLLGSSMISNFLDLNDNFHLPLQIMDPRKIAQELNLTFDG 364
Query: 246 FQELC 260
FQ+ C
Sbjct: 365 FQDYC 369
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 242 RVSGTMQRKDEMM-HKKDELLQVKDTQVSNLIAK 340
RV +Q KD ++ + KD++L DTQ++ I K
Sbjct: 884 RVEENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 242 RVSGTMQRKDEMM-HKKDELLQVKDTQVSNLIAK 340
RV +Q KD ++ + KD++L DTQ++ I K
Sbjct: 884 RVEENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 242 RVSGTMQRKDEMM-HKKDELLQVKDTQVSNLIAK 340
RV +Q KD ++ + KD++L DTQ++ I K
Sbjct: 884 RVEENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 242 RVSGTMQRKDEMM-HKKDELLQVKDTQVSNLIAK 340
RV +Q KD ++ + KD++L DTQ++ I K
Sbjct: 884 RVEENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 242 RVSGTMQRKDEMM-HKKDELLQVKDTQVSNLIAK 340
RV +Q KD ++ + KD++L DTQ++ I K
Sbjct: 884 RVEENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 242 RVSGTMQRKDEMM-HKKDELLQVKDTQVSNLIAK 340
RV +Q KD ++ + KD++L DTQ++ I K
Sbjct: 884 RVEENIQLKDGLLINSKDQILLPNDTQLTRTIIK 917
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 3 GKYDPAIKQQEEKNKQLVTKLIATF 77
G+++ IKQQEE K L +K + F
Sbjct: 442 GEFENLIKQQEEAKKSLWSKRFSRF 466
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/62 (22%), Positives = 32/62 (51%)
Frame = -3
Query: 316 RVFNLQQLVFFVHHFIFSLHSS*NPVYMRLRSVITRVTCKSLASICLSLIAMMRSINSCF 137
R+F+LQ+LV ++ + + + ++ L + T+V+C + I + +R + F
Sbjct: 1190 RLFSLQKLVEISYYNMRRIRMEWSSIWSLLGTYFTQVSCHENSIIASFALDSLRQFSMQF 1249
Query: 136 LK 131
L+
Sbjct: 1250 LE 1251
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 66 IATFTEHTNALQGLVAQK 119
I TFT+HT+A+ GL K
Sbjct: 374 IVTFTQHTSAVSGLCFSK 391
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 552 SGVVPIDGRIRPDILTTMLAASMLRLCFWLSTYVFWPVIAVNVVPSR 412
S VV D I T+ A ++ LCF+ Y +PV A+ + R
Sbjct: 304 SQVVSPDSTILTLFTITLSIALLVTLCFYDVKYARYPVFALKSLKDR 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,687
Number of Sequences: 5004
Number of extensions: 48762
Number of successful extensions: 172
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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