Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120054.Seq
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0524 + 23671376-23671603,23672159-23672392 33 0.17
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053... 31 1.2
01_06_0195 + 27379266-27379300,27379870-27382174 30 1.5
03_06_0205 - 32347636-32347646,32347762-32347801,32347959-323480... 29 3.6
12_02_0913 + 24246217-24247557 28 6.2
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337... 28 6.2
03_06_0024 + 31103185-31104579 28 6.2
12_01_0393 - 3100230-3100714,3100973-3101097,3101271-3101399,310... 28 8.3
07_03_0439 + 18212584-18213065,18214164-18215010 28 8.3
04_03_0446 - 16012926-16013042,16013266-16013469 28 8.3
>02_04_0524 + 23671376-23671603,23672159-23672392
Length = 153
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -3
Query: 475 VLLAFHVRLLAGNSRKRSAVARXAQHRMFALVRGVLNRAIRQIYHFGN*IGD 320
+L+AF LL G + R A + A + + +G + I IY+FG+ I D
Sbjct: 9 ILVAFLALLLVGTCQARPAPGKAASSSLSSAAKGAVVDGITDIYNFGDSISD 60
>04_03_0795 -
19704354-19704464,19705152-19705214,19705298-19705378,
19705468-19705623,19705711-19705785,19706477-19706587,
19707206-19707304,19707453-19707546,19707779-19707838,
19709262-19709334,19711448-19711490,19711533-19711606,
19711985-19712075,19712170-19712214,19712533-19712589,
19713440-19713544,19713817-19713932,19714625-19714634,
19714810-19714920,19715502-19715594,19715664-19715690,
19715736-19715798,19716326-19716451,19716812-19716949,
19717164-19717832,19717949-19718123,19718269-19718450
Length = 1015
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 329 LIAKMIDLSDRAVQYPADKRKHPVL 403
LIA+++ LSDRA AD+R HPVL
Sbjct: 33 LIAELLLLSDRAPSQFADRRFHPVL 57
>01_06_0195 + 27379266-27379300,27379870-27382174
Length = 779
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 389 CACPRGIEPRDPTNLSFWQLNWRP 318
C+CP G E RDPTN W RP
Sbjct: 293 CSCPPGYEMRDPTN---WSRGCRP 313
>03_06_0205 -
32347636-32347646,32347762-32347801,32347959-32348060,
32348473-32348599,32348893-32350835,32351347-32351367
Length = 747
Score = 29.1 bits (62), Expect = 3.6
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Frame = +2
Query: 257 MQRKDEMMHK-KDE--LLQVK-DTQVSNLIAKMIDLSDRAVQYPADKRKHPVLCVTRDGT 424
+Q K E + K K E LL +K D + L K+ + R Q + K P LC+T DG
Sbjct: 342 LQEKTEELFKFKREKGLLTLKNDVEFEPLRKKIPQIISRMDQIISKNIKMPSLCMTNDGL 401
Query: 425 TFTAITGQK---TYVESQKHKRNIDAANI 502
I+ ++ Y E+Q H R + A N+
Sbjct: 402 DERCISAKRIDSLYYENQ-HLRGLLADNM 429
>12_02_0913 + 24246217-24247557
Length = 446
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -3
Query: 187 SICLSLIAMMRSINSCFLKSSSVFCATSPCSAFVCSVNVAISLVTNCLFFSSCCLIAG 14
S CL + +++ +SS F A PC+A +C+ N ++ C + C +IAG
Sbjct: 119 STCLRKVCARQALPYYNSSASSTF-APVPCAARICAAN--DDIIHFCDLAAGCSVIAG 173
>11_01_0442 -
3369827-3370168,3370608-3372616,3372953-3373277,
3373386-3373415
Length = 901
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +3
Query: 12 DPAIKQQEEKNKQLVTKLIATFTEHTNALQGLVAQKTEELFKKQEFIERIIAIKDKQIEA 191
D + ++ K+ V +L E ++ VA+KT+EL + ++ I +Q+EA
Sbjct: 145 DDQVNHLDDALKECVRQLRQAREEQEEKIRDAVAKKTQELDSHKSELQNHIYELKQQLEA 204
Query: 192 KDLQVTRV 215
L+ V
Sbjct: 205 AKLEAATV 212
>03_06_0024 + 31103185-31104579
Length = 464
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = +2
Query: 371 YPADKRKHPVLCVTRDGTTFTAITGQKTYVESQKHKRNIDAANIV----VRISGLILPSI 538
Y A K H LC+ + F + QK Y QK D N+V +R G I+ SI
Sbjct: 391 YEATKNAHG-LCILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVVDPEKLREIGFIVYSI 449
Query: 539 G 541
G
Sbjct: 450 G 450
>12_01_0393 -
3100230-3100714,3100973-3101097,3101271-3101399,
3102480-3102508
Length = 255
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 418 RHYVYGYYRP-KDVRGKPKAQT*HRRC 495
+HY++G +RP KD+ G + Q H C
Sbjct: 99 KHYLWGLFRPRKDIVGVAEEQAAHAMC 125
>07_03_0439 + 18212584-18213065,18214164-18215010
Length = 442
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +2
Query: 284 KKDELLQVKDT---QVSNLIAKMIDLSDRAVQYPADKRKHPVLCVTRDG 421
K D+L++ D+ + S L KM++L R + P R+HP + R G
Sbjct: 393 KIDDLIKQYDSHSRRASELRLKMVNLQTRPISPPPRLRRHPSHLLPRKG 441
>04_03_0446 - 16012926-16013042,16013266-16013469
Length = 106
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +1
Query: 364 GSIPRGQAQTSGAVRXARRHYVYGYYRPKDVRGKPKAQT 480
G +PRG + G + RR G +R + G P ++
Sbjct: 22 GGVPRGAEVSGGGLEEERRRQAKGSWRWRQAEGSPAGRS 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,348,198
Number of Sequences: 37544
Number of extensions: 321634
Number of successful extensions: 916
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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