Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120054.Seq
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)         31   0.90 
SB_3314| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_27299| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_6367| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.84)              30   2.1  
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0)               29   3.6  
SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_50378| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)              28   6.4  
SB_46506| Best HMM Match : DUF827 (HMM E-Value=6.9)                    28   6.4  
SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44)           28   6.4  
SB_20167| Best HMM Match : RhoGEF (HMM E-Value=0.73)                   28   6.4  
SB_58791| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      28   8.4  
SB_23399| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_21238| Best HMM Match : 7tm_3 (HMM E-Value=6.5e-10)                 28   8.4  
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
 Frame = +2

Query: 248  SGTMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDRAV-QYPADKRKHPVLCVTRDGT 424
            +G + +  E   K++ ++     +    +  M+    R V QY    ++HP   + RDG 
Sbjct: 2373 NGLVMKCLEFAFKQEHVMDFTRMRALESLFSMVHQGVRNVLQY---NQQHPDFPMDRDGL 2429

Query: 425  T-----FTAITGQKTYVESQKHKRNIDAANIVVRISGLILPSIGTTPLIGYKVNVASEHL 589
                  F   +   ++    K +   D  N +  I+ + LPS  +TP+I ++VN+  E +
Sbjct: 2430 ELYIPRFLVFSLLWSFAGDGKLRVREDLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWI 2489

Query: 590  V 592
            +
Sbjct: 2490 L 2490


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 15/47 (31%), Positives = 31/47 (65%)
 Frame = +2

Query: 218  DRPQPHVHRVSGTMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSD 358
            +R   H+  ++ + ++ DE+M +KD+LL+ K   V++L  KM +++D
Sbjct: 1607 ERENKHLALLAESEKKIDELMVQKDKLLKEKVDLVNSLHEKMSEMND 1653


>SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)
          Length = 1127

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
 Frame = +3

Query: 6   KYDPAIKQQE------EKNKQLVTKLIATFTEHTNALQGLVAQKTEELFKKQEFIERIIA 167
           K D +I +QE      ++ ++L  +L     EH N +Q +  +  EE+ K +E  E+ + 
Sbjct: 757 KADASIAEQELRAELNQQRRRLEEELAKAAFEHGNKMQSMQEEHAEEMRKAKEMAEQDLK 816

Query: 168 IKDKQIEAK 194
             + ++EAK
Sbjct: 817 DLEARLEAK 825


>SB_3314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 663

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +3

Query: 12  DPAIKQQEEKNKQLVTKLIATFTEHTNALQGLVAQKTEELFKKQEFIERIIAIK 173
           D A K Q+EK +  ++KLI  F E   ++    A   +++   + F+E +I ++
Sbjct: 121 DEATKAQQEKTRVFLSKLIHKFLEILKSIPATGAADVDKIHYCERFLELLIDLE 174


>SB_27299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +3

Query: 120 TEELFKKQEFIERIIAIKDKQIEAKDLQVTR 212
           TE+ F+K +FIE+ I IKD++     ++VTR
Sbjct: 93  TEKGFEKYKFIEKRIKIKDEKDSVYQIKVTR 123


>SB_6367| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.84)
          Length = 563

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/80 (27%), Positives = 37/80 (46%)
 Frame = +3

Query: 18  AIKQQEEKNKQLVTKLIATFTEHTNALQGLVAQKTEELFKKQEFIERIIAIKDKQIEAKD 197
           ++   E+  +Q+ ++L      H N    L AQ   E  + QE    I  +KDK  EA +
Sbjct: 56  SLTNTEDDLRQISSQLEELKENHANETTSLKAQVASEQERNQENARVIPKLKDKLAEA-E 114

Query: 198 LQVTRVMTDLNRMYTGFQEL 257
           +QV  +   L  M  G +++
Sbjct: 115 VQVESMFNALLDMRKGARKM 134


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +3

Query: 12   DPAIKQQEEKNKQLVTKLIAT--FTEHTNALQGLVAQKTEELFK-KQEFIERIIAIKDKQ 182
            D A+K+ +EKNK+L  +L AT    +  + L   +  + E++ K K++  + +   K+K+
Sbjct: 823  DNALKEFQEKNKELECQLAATGELKKTVDELSNSITLRDEKITKIKEQLKQTLEKFKEKE 882

Query: 183  IEAKD 197
               K+
Sbjct: 883  KALKE 887


>SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
          Length = 1311

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
 Frame = -3

Query: 283 VHHFIFSLHSS*NPVYMRLRSV---ITRVTCKSLASICLSLIAMMRSINSCFLKSSSVFC 113
           V + + S+H   N V  RL SV   ++ V C+ L+S+   LI++    +S   +SSSV C
Sbjct: 426 VPYRLSSVHCRLNSVPSRLSSVPFLLSLVPCR-LSSVPCRLISLPSRFSSVPSRSSSVLC 484

Query: 112 ATSPCSAFVCSVNVAISLVTNCL 44
             S     +  V + +S V + L
Sbjct: 485 RLSSVPYRLSLVTLRLSSVPSRL 507


>SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 333 IKLETCVSLTCNNSSFLCIISSFLCIVPETRCT 235
           IK + C   TC+N    C+I+SF   + E RCT
Sbjct: 20  IKQDPCSEKTCSNQGEECVINSF--GMAECRCT 50


>SB_50378| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
          Length = 969

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 3   GKYDPAIKQQEEKNKQLVTKLIATFTEHTNALQGLVAQKTEELFKKQEFIERIIAIK 173
           GKY P     EE  +QLV         H++     ++Q    +F+  EF   +IA++
Sbjct: 345 GKYHPLDGMTEETRQQLVNDHFLFKKVHSDGSSTAISQLPFTIFRTTEFEIGVIALR 401


>SB_46506| Best HMM Match : DUF827 (HMM E-Value=6.9)
          Length = 261

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 33  EEKNKQLVTKLIATFTEHTNALQGLVAQKTEEL 131
           E +N  L  KL     E+ N+L+ +VAQ  EEL
Sbjct: 171 ETENAMLYLKLAEELKENLNSLKSVVAQMPEEL 203


>SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44)
          Length = 788

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 9   YDPAIKQQEEKNKQLVTKLIATFTEHTNALQGLVAQKTEEL 131
           YD  +     + K + TK +   T++ +  +GL+A+K +EL
Sbjct: 400 YDKELSDIRSQLKTVETKRVVVETDYKDKYEGLMAEKLQEL 440


>SB_20167| Best HMM Match : RhoGEF (HMM E-Value=0.73)
          Length = 445

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 70  RHLPSTQTRCKGWWRKKPRNFLKSKSLSNASSQLRTSRLRPKTCK 204
           RHLP      K   RK+ R + K+K LS   +     R+R  T K
Sbjct: 173 RHLPWVSPAIKRLMRKRDRAYKKAKRLSKEKNLRSYRRIRNYTTK 217


>SB_58791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 472 LLAFHVRLLAGNSRKRSAVARXAQHRMFALVRGVLNRAIRQIYHFGN*IGDLR 314
           LLA    + A  SR        A+H  F ++  ++  AI  + H+GN  G+LR
Sbjct: 494 LLAALCAVFAFKSRNLPETYSEAKHICFTMLSYMITWAIYFVGHYGNTAGNLR 546


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 194 RLASDARDDRPQPHVHRVSGTMQRKDEMMHKKDELLQVKDTQVSNL 331
           +L S     + QP  H++S   Q+  +  H++ +LLQ +  Q S +
Sbjct: 667 QLQSSMSSQQQQPQQHQIS-AQQQLQQQQHQQQQLLQQQQQQQSQM 711


>SB_23399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 827

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
 Frame = -3

Query: 322 DLRVFNLQQLVFFVHHFIFSLHSS*NPVYMRL-----RSVITRVTCKSLASICLSLIAMM 158
           D  +  L  L+  V   +FSL +  +P+  RL     R ++TR+      S C S I  +
Sbjct: 503 DSELIGLVVLMIAVDLVVFSLWAGVDPLTYRLQQSGERHIVTRLNATMTHSYCFSKIRKV 562

Query: 157 RSINSCFLKSSSV 119
           R     FL+  S+
Sbjct: 563 RKHAEEFLRFQSL 575


>SB_21238| Best HMM Match : 7tm_3 (HMM E-Value=6.5e-10)
          Length = 270

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 472 LLAFHVRLLAGNSRKRSAVARXAQHRMFALVRGVLNRAIRQIYHFGN*IGDLR 314
           LLA    + A  SR        A+H  F ++  ++  AI  + H+GN  G+LR
Sbjct: 85  LLAALCAVFAFKSRNLPETYSEAKHICFTMLSYMITWAIYFVGHYGNTAGNLR 137


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = +3

Query: 21   IKQQEEKNKQLVTKLIATFTEHTNALQGLVAQKTEELFKKQEFIERIIAIKDKQIEAKDL 200
            I   E  NK L T       E   A Q  V Q+T+    K+E  + ++ +KD Q E   L
Sbjct: 1647 ISDLEVDNKNLETARDNAVYERDIANQKFVEQRTDNEVLKEEKEKLLMQLKDLQNEVARL 1706

Query: 201  QVTRVMTDLNRMYTGFQEL 257
            +    + DL +    +++L
Sbjct: 1707 E--NQLEDLKKRNADYEKL 1723


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,477,829
Number of Sequences: 59808
Number of extensions: 392880
Number of successful extensions: 1230
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)