Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120054.Seq
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55366-1|AAA97980.2| 430|Caenorhabditis elegans Suppressor of c... 35 0.049
AF419335-1|AAL15971.1| 430|Caenorhabditis elegans multisubstrat... 35 0.049
U28735-1|AAG38886.2| 272|Caenorhabditis elegans Hypothetical pr... 31 0.60
L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclas... 31 0.80
AF106591-5|AAK71394.1| 637|Caenorhabditis elegans Hypothetical ... 31 0.80
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ... 31 0.80
AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical ... 31 0.80
Z70270-9|CAI79144.1| 261|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z80215-10|CAB02271.3| 175|Caenorhabditis elegans Hypothetical p... 28 5.6
U23510-6|AAC46784.2| 236|Caenorhabditis elegans Hypothetical pr... 28 5.6
AY462219-1|AAR26006.1| 358|Caenorhabditis elegans GATA transcri... 28 5.6
AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical ... 28 5.6
AF353302-1|AAK32716.1| 376|Caenorhabditis elegans GATA-like tra... 28 5.6
AF067612-7|AAD36952.2| 376|Caenorhabditis elegans Egg laying de... 28 5.6
AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical ... 28 5.6
Z70211-4|CAA94159.1| 825|Caenorhabditis elegans Hypothetical pr... 28 7.4
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 28 7.4
>U55366-1|AAA97980.2| 430|Caenorhabditis elegans Suppressor of clr
protein 1 protein.
Length = 430
Score = 35.1 bits (77), Expect = 0.049
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 442 RPKDVRGKPKAQT*HRRCQHCGENIRPNPTVDWNNATDRLQSKRSKRTFSFDSLEEAQQF 621
+PK++RG+ +A T +R G N N + +++ T Q + + + D E Q
Sbjct: 326 KPKNLRGEEEAGTRYRNLSRNGVNENGNYSATFSSRTSNYQQSETSKRRNLDYFEPTQMI 385
Query: 622 EN 627
EN
Sbjct: 386 EN 387
>AF419335-1|AAL15971.1| 430|Caenorhabditis elegans multisubstrate
adaptor proteinSOC-1 protein.
Length = 430
Score = 35.1 bits (77), Expect = 0.049
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 442 RPKDVRGKPKAQT*HRRCQHCGENIRPNPTVDWNNATDRLQSKRSKRTFSFDSLEEAQQF 621
+PK++RG+ +A T +R G N N + +++ T Q + + + D E Q
Sbjct: 326 KPKNLRGEEEAGTRYRNLSRNGVNENGNYSATFSSRTSNYQQSETSKRRNLDYFEPTQMI 385
Query: 622 EN 627
EN
Sbjct: 386 EN 387
>U28735-1|AAG38886.2| 272|Caenorhabditis elegans Hypothetical
protein F48E3.9 protein.
Length = 272
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/80 (23%), Positives = 42/80 (52%)
Frame = +3
Query: 27 QQEEKNKQLVTKLIATFTEHTNALQGLVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQV 206
++ + N LV +L A + ++ G++ K E + ++ E +E+ I +DK + ++
Sbjct: 168 KEAQNNSDLVLELKAALQQEKSSSHGML-NKIEIMRQRCEDLEKSILDRDKSEDENIMER 226
Query: 207 TRVMTDLNRMYTGFQELCRE 266
+RV +LN ++ + L E
Sbjct: 227 SRVEKELNALHALSKSLSSE 246
>L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclase
protein.
Length = 1276
Score = 31.1 bits (67), Expect = 0.80
Identities = 11/45 (24%), Positives = 27/45 (60%)
Frame = +3
Query: 30 QEEKNKQLVTKLIATFTEHTNALQGLVAQKTEELFKKQEFIERII 164
++ + LV L+ ++ N L+GLV ++T+E +++ +E ++
Sbjct: 1015 RDNETSNLVDNLLKRMEQYANNLEGLVEERTQEYLAEKKKVEELL 1059
>AF106591-5|AAK71394.1| 637|Caenorhabditis elegans Hypothetical
protein T01A4.1b protein.
Length = 637
Score = 31.1 bits (67), Expect = 0.80
Identities = 11/45 (24%), Positives = 27/45 (60%)
Frame = +3
Query: 30 QEEKNKQLVTKLIATFTEHTNALQGLVAQKTEELFKKQEFIERII 164
++ + LV L+ ++ N L+GLV ++T+E +++ +E ++
Sbjct: 388 RDNETSNLVDNLLKRMEQYANNLEGLVEERTQEYLAEKKKVEELL 432
>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
protein T01A4.1a protein.
Length = 1217
Score = 31.1 bits (67), Expect = 0.80
Identities = 11/45 (24%), Positives = 27/45 (60%)
Frame = +3
Query: 30 QEEKNKQLVTKLIATFTEHTNALQGLVAQKTEELFKKQEFIERII 164
++ + LV L+ ++ N L+GLV ++T+E +++ +E ++
Sbjct: 956 RDNETSNLVDNLLKRMEQYANNLEGLVEERTQEYLAEKKKVEELL 1000
>AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical
protein T01A4.1c protein.
Length = 1276
Score = 31.1 bits (67), Expect = 0.80
Identities = 11/45 (24%), Positives = 27/45 (60%)
Frame = +3
Query: 30 QEEKNKQLVTKLIATFTEHTNALQGLVAQKTEELFKKQEFIERII 164
++ + LV L+ ++ N L+GLV ++T+E +++ +E ++
Sbjct: 1015 RDNETSNLVDNLLKRMEQYANNLEGLVEERTQEYLAEKKKVEELL 1059
>Z70270-9|CAI79144.1| 261|Caenorhabditis elegans Hypothetical
protein C53D6.11 protein.
Length = 261
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = -3
Query: 304 LQQLVFFVHHFIFSLHSS*NPVYMRLRSVITRVTCKSLASICLSLIAMMRSINSCFLKSS 125
LQ L+ +SL ++ +PVY S+++R+ + ++C ++I + ++ S
Sbjct: 81 LQVLLLLCEVIDWSL-AAFSPVYFHHSSLLSRIMPFIVGAVCYAII--LTALLVIDATSL 137
Query: 124 SVFCATSP-CSAFVCSVNVAISLVTNCL 44
+V C TSP SA + + ++++ T C+
Sbjct: 138 TVSCITSPEASAVTSAYDFSLAITTVCV 165
>Z80215-10|CAB02271.3| 175|Caenorhabditis elegans Hypothetical
protein C36B1.6 protein.
Length = 175
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Frame = -3
Query: 208 VTCKSLASICLSLIAMMR---SINSCFLKSSSVFCATSPC------SAFV-CSVNVAISL 59
+ C S+ S+ L++ M+ +I C L S+ F + C ++F+ C+ +
Sbjct: 77 IDCCSIFSVLLNIARMVMFGGTILGCVLVIST-FSRNNECDQLLYWTSFIFCAFFIIFYS 135
Query: 58 VTNCLFFSSCCLI-AGSY 8
+T C+F CC I G+Y
Sbjct: 136 ITTCIFICCCCCIFTGAY 153
>U23510-6|AAC46784.2| 236|Caenorhabditis elegans Hypothetical
protein R12C12.5 protein.
Length = 236
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = +2
Query: 221 RPQPHVHRVSGTMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDRAVQYPADKRKHPV 400
R P G ++ +E++ KK E +++ Q K + + + K+KH
Sbjct: 31 RKAPTADEAIGNLRDAEELLIKKQEYFELRIEQEVESAKKYMKTNKKMALAALRKKKHYE 90
Query: 401 LCVTRDGTTFTAITGQKTYVES-QKHKRNID 490
++R T + Q+T +E+ H ID
Sbjct: 91 QELSRIDGVLTKLEAQRTALENVGMHNEVID 121
>AY462219-1|AAR26006.1| 358|Caenorhabditis elegans GATA
transcription factor EGL-18A protein.
Length = 358
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 245 VSGTMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDRAVQYPADKRKHPVLCVT 412
+S M+R D++ ++ DELL+ + S+ ++ S +A PA+ R P L T
Sbjct: 44 ISMVMERMDKLQYRLDELLKENNELKSSSVS-----SGKASPSPAESRSSPKLVET 94
>AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical
protein Y32F6A.4 protein.
Length = 519
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 205 TCKSLASICLSLIAMMRSINSCFLKSSSVFCATSPCSAFVCSVNVAISLVTNCL 44
TC+ L SIC+ + M S+ L S ++ S S + I +V CL
Sbjct: 139 TCQLLVSICIDVTQFMISVVYLLLASKNIMNMIIAFSGTHISFCILILIVATCL 192
>AF353302-1|AAK32716.1| 376|Caenorhabditis elegans GATA-like
transcription factorELT-5 protein.
Length = 376
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 245 VSGTMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDRAVQYPADKRKHPVLCVT 412
+S M+R D++ ++ DELL+ + S+ ++ S +A PA+ R P L T
Sbjct: 44 ISMVMERMDKLQYRLDELLKENNELKSSSVS-----SGKASPSPAESRSSPKLVET 94
>AF067612-7|AAD36952.2| 376|Caenorhabditis elegans Egg laying
defective protein 18 protein.
Length = 376
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 245 VSGTMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDRAVQYPADKRKHPVLCVT 412
+S M+R D++ ++ DELL+ + S+ ++ S +A PA+ R P L T
Sbjct: 44 ISMVMERMDKLQYRLDELLKENNELKSSSVS-----SGKASPSPAESRSSPKLVET 94
>AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical
protein Y102A11A.9 protein.
Length = 332
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/58 (22%), Positives = 27/58 (46%)
Frame = +3
Query: 60 KLIATFTEHTNALQGLVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNR 233
K +A++ L + + + K++ F+ERI+ + E D + R +T + R
Sbjct: 41 KKVASYETDLKKLSTEMQRLRRDAEKRETFLERIVTAQYHPTELNDTNLARTLTSIKR 98
>Z70211-4|CAA94159.1| 825|Caenorhabditis elegans Hypothetical
protein K11E4.4 protein.
Length = 825
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 123 EELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQELCR 263
E L KKQ+ +E+++ +D++ + L ++ + + R Y QEL R
Sbjct: 373 EVLKKKQKELEKVVKSQDREYKELVLGLSEPLRHVERYYNLLQELER 419
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 24 KQQEEKNKQLVTKLIATFTEHTNALQGLVAQKTEELFKKQEFIERIIAIKD 176
+ QEE ++ ++K+ + N + + +K ELFK+ ++R+ +KD
Sbjct: 363 EHQEEPDEDTMSKVKVLYIR--NIKEAVTEEKLNELFKEYASLDRVKKVKD 411
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,451,269
Number of Sequences: 27780
Number of extensions: 295071
Number of successful extensions: 1097
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -