Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120054.Seq
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.70 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.6  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 293 ELLQVKDTQVSNLIAKMIDLSD 358
           +L  +K    SNL+AK IDLSD
Sbjct: 187 DLKHMKQEAGSNLVAKGIDLSD 208


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 499 HCGENIRPNPTVDWNNAT 552
           HC     P PT+ W  AT
Sbjct: 730 HCQAQGVPTPTIVWKKAT 747


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 499 HCGENIRPNPTVDWNNAT 552
           HC     P PT+ W  AT
Sbjct: 726 HCQAQGVPTPTIVWKKAT 743


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 66  IATFTEHTNALQGLVAQKTEELF 134
           I  F+E  N L+G   +K +E++
Sbjct: 482 IVIFSERPNLLEGWKVEKIQEIY 504


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 113 RHQPLQRVCVLGKCRNQFSHQLFVLFLLLFN 21
           +H  L R  V      +  HQ  VLF LL++
Sbjct: 85  KHGMLPRGQVFTMMNKEMRHQAVVLFRLLYS 115


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 113 RHQPLQRVCVLGKCRNQFSHQLFVLFLLLFN 21
           +H  L R  V      +  HQ  VLF LL++
Sbjct: 85  KHGMLPRGQVFTMMNKEMRHQAVVLFRLLYS 115


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -1

Query: 585 CSLATFTL*PISGVVPIDGRIRPDILTTMLAASMLRLCFWLSTY 454
           CS AT  +  + G+     +I  D+L   +  S   +   LS+Y
Sbjct: 159 CSTATVYVMSVVGLSKAPAQIPVDVLVLTVTLSASAMVLGLSSY 202


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 315 VSLTCNNSSFLCIISSFLCIVPETRC 238
           V  T  N++FLC+ S+ L     T C
Sbjct: 6   VFTTLINAAFLCLASTILSESAGTSC 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,654
Number of Sequences: 438
Number of extensions: 3548
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)