Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120053.Seq
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 66 3e-11
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 54 1e-07
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583... 45 6e-05
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 42 5e-04
05_05_0136 - 22631260-22631325,22631735-22631821,22631898-226320... 40 0.002
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 32 0.58
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 30 2.4
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 30 2.4
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 30 2.4
04_01_0308 + 4188726-4190351 29 5.4
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 66.1 bits (154), Expect = 3e-11
Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Frame = +1
Query: 10 NCEYKNGYSETDQQIRWFWETFHELPLEDKKKFLLFLTGSDRVPIQGMRDI-------KI 168
N EY GYS I WFWE + ED +FL F+TG+ +VP++G + + +
Sbjct: 3529 NAEYI-GYSPASPVILWFWEVVNGFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRF 3587
Query: 169 RIQPV--ADDRFFPVAHTCFNLLDLPRYKTK 255
+I A +R P AHTCFN LDLP Y +K
Sbjct: 3588 QIHKAYGAPER-LPSAHTCFNQLDLPEYSSK 3617
>05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Frame = +1
Query: 4 QNNCEYKNGYSETDQQIRWFWETFHELPLEDKKKFLLFLTGSDRVPIQGMR--DIKIRIQ 177
++N Y GY + I FWE ++KKFL F+TG R P+ G + + K IQ
Sbjct: 918 RSNTNYSGGYHPDHELIDIFWEVLKSFSSHNQKKFLKFVTGCSRGPLLGFQYLEPKFCIQ 977
Query: 178 PVA-------DDRFFPVAHTCFNLLDLPRYKTK 255
D+ P + TC NLL LP Y+ K
Sbjct: 978 RAGVPGMEEEDEDRLPTSATCMNLLKLPPYRNK 1010
>03_05_0712 - 27057858-27057941,27058093-27058182,27058268-27058384,
27059759-27059866,27060314-27060406,27060499-27060669,
27061505-27061757,27061860-27062138,27062939-27063273,
27063364-27064332,27064711-27065182,27065243-27065291,
27066564-27066804,27067606-27067695,27068172-27068294,
27068365-27068418
Length = 1175
Score = 45.2 bits (102), Expect = 6e-05
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Frame = +1
Query: 4 QNNCEYKNGYSETDQQIRWFWETFHELPLEDKKKFLLFLTGSDRVPIQGMRDIK--IRIQ 177
+NN +Y GY+E+ + ++ FWE ++ L F+T R P+ G + ++ I
Sbjct: 1058 RNNTKYTGGYTESSRSVKLFWEVIKGFKPTERCMLLKFVTSCSRAPLLGFKYLQPSFTIH 1117
Query: 178 PV------------ADDRFFPVAHTCFNLLDLPRYK 249
V D P A TC+N L LP YK
Sbjct: 1118 KVPCDVTLWATIGGQDVDRLPSASTCYNTLKLPTYK 1153
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Frame = +1
Query: 4 QNNCEYKNGYSETDQQIRWFWETFHELPLEDKKKFLLFLTGSDRVPIQGMRDIKIRIQPV 183
+++ + GY + F E E ED++ FL F TG+ ++P+ G+ + ++ V
Sbjct: 1211 EDHINFDYGYDANSASVISFLEILREFGREDQRAFLHFTTGAPQLPLGGLASLDPKLTVV 1270
Query: 184 AD------DRFFPVAHTCFNLLDLPRYKTK 255
D P +TC + LP Y +K
Sbjct: 1271 RKQCDGKVDNELPSVNTCRHFFKLPPYSSK 1300
>05_05_0136 - 22631260-22631325,22631735-22631821,22631898-22632026,
22632122-22632190,22632271-22632351,22632598-22632702,
22632786-22633016,22633098-22634272,22634391-22634457,
22636705-22637778,22638119-22638274,22638827-22638985,
22639062-22639220,22639306-22639422,22639502-22639612,
22639690-22640358
Length = 1484
Score = 40.3 bits (90), Expect = 0.002
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Frame = +1
Query: 7 NNCEYKNGYSETDQQIRWFWETFHELPLEDKKKFLLFLTGSDRVPIQGMRDIKIRIQPV- 183
++ ++ +GY+ + + E E ++ FL F+TGS R+P G+ + ++ V
Sbjct: 1374 DHIKFDHGYTSSSPPVINLLEVIQEFEGHQRRAFLQFITGSPRLPPGGLAALNPKLTVVR 1433
Query: 184 -------ADDRFFPVAHTCFNLLDLPRYKTK 255
ADD P TC N L LP Y +K
Sbjct: 1434 KQHNSNEADDD-LPSVMTCANYLKLPPYSSK 1463
>09_04_0560 -
18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +1
Query: 82 LPLEDKKKFLLFLTGSDRVPIQGMRDI--KIRIQPVAD--DRFFPVAHTCFNLLDLPRY 246
L +E +++ L F T +P G + K+ I V++ DR P +HTCF L LP Y
Sbjct: 751 LSIEQQRQLLFFWTSVKYLPSDGFGGLASKLYIYKVSESADRL-PSSHTCFYRLCLPAY 808
>11_04_0236 + 15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +1
Query: 118 LTGSDRVPI----QGMRDIKIRIQPVADDRFFPVAHTCFNLLDLPRYKTKRGS 264
LTG PI +R +R + DD +A TC +L DL Y+ RGS
Sbjct: 2229 LTGQQLAPIIRSCGNLRTFCVR-DSIGDDGLSAIAETCLDLQDLRVYRLLRGS 2280
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 460 TSLVSLNKRVVSIDFVPS*ILCNLCFHGSITITI 561
T L L++R V D + +CN CFHGS I I
Sbjct: 208 TILCDLHRRRVWFDDRTANAICNACFHGSSRIMI 241
>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 29.9 bits (64), Expect = 2.4
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 19/102 (18%)
Frame = +1
Query: 7 NNCEYKNGYSETDQQIRWFWETFHELPLEDKKKFLLFLTGSDRVPIQGMRDIK-----IR 171
+N ++ +GY+ I E E E + F F+TG+ R+P G+ + +R
Sbjct: 1660 DNIKFDHGYTAKSPAIVNLLEIMAEFTPEQQHAFCQFVTGAPRLPPGGLAALNPKLTIVR 1719
Query: 172 IQP--------------VADDRFFPVAHTCFNLLDLPRYKTK 255
P ADD P TC N L LP Y TK
Sbjct: 1720 KHPSSAVNTSNIAGVTESADDD-LPSVMTCANYLKLPPYSTK 1760
>04_01_0308 + 4188726-4190351
Length = 541
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 544 IHENKDYIKFNLGRNQLKPPVYSKRQGTFEVDPARL 437
IH+NKD++K + Q + + K+Q FE + RL
Sbjct: 115 IHDNKDFMKTENNKLQSEALIVEKKQIMFEAEIKRL 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,401,840
Number of Sequences: 37544
Number of extensions: 358501
Number of successful extensions: 737
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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