Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120052.Seq
         (762 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    25   0.50 
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    25   0.50 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    25   0.66 

>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 16  LVEGKPLYVGRAQKKAERQKELKRKFEQ-LKSERL 117
           L+E KP +    + K + Q E K+K+++ LK E L
Sbjct: 90  LIENKPNWWQELESKFDPQGEYKKKYDELLKKEGL 124


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 16  LVEGKPLYVGRAQKKAERQKELKRKFEQ-LKSERL 117
           L+E KP +    + K + Q E K+K+++ LK E L
Sbjct: 90  LIENKPNWWQELESKFDPQGEYKKKYDELLKKEGL 124


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +3

Query: 471 LYHRSLQHHVTMDSSNDSNKTYNSKVECTAPCKPSTQAASAYANM-QPTYRPAPRAPAQS 647
           L+H  + HH+  + S  ++  +   +    P   S      YA+M Q  Y      P+  
Sbjct: 347 LHHNPMSHHLKQEPSGFTSSNHPFSINRLLPTAESKADIKMYADMHQYGYNTLSPLPSSV 406

Query: 648 TIRTSLG 668
              +++G
Sbjct: 407 HSHSTIG 413


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,332
Number of Sequences: 336
Number of extensions: 3473
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)