Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120052.Seq
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 111 8e-26
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 47 3e-06
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 40 3e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 38 0.002
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 33 0.044
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 32 0.078
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 32 0.10
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 31 0.24
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.31
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 29 0.55
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.72
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 28 1.7
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 28 1.7
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 28 1.7
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 28 1.7
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.2
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 27 2.9
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom... 27 2.9
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 27 3.9
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 3.9
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 26 5.1
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.1
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 5.1
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 26 5.1
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 26 6.7
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||... 25 8.9
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 25 8.9
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 111 bits (268), Expect = 8e-26
Identities = 52/85 (61%), Positives = 70/85 (82%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 180
LN KE +GK LYVGRAQKK ER++EL++++EQ+K E++ +YQGVNL++KNL D +DDER
Sbjct: 321 LNDKEY-KGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDER 379
Query: 181 LRKEFAPFGTITSAKVML-EDGRIK 252
L+ EF+ FGTITSAK+M E G+ K
Sbjct: 380 LKAEFSAFGTITSAKIMTDEQGKSK 404
Score = 66.9 bits (156), Expect = 3e-12
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFVC+++PEEA KAVTEMN R++ KPLYVALAQRKE R++ L
Sbjct: 407 GFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQL 449
Score = 38.3 bits (85), Expect = 0.001
Identities = 30/86 (34%), Positives = 42/86 (48%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 180
+NG L+ K +YVG + ERQ K E LK+ N+Y+KNLD I ++
Sbjct: 228 VNGM-LLNDKKVYVGHHVSRRERQS----KVEALKANF------TNVYIKNLDTEITEQE 276
Query: 181 LRKEFAPFGTITSAKVMLEDGRIKAR 258
F FG ITS +++D K R
Sbjct: 277 FSDLFGQFGEITSLS-LVKDQNDKPR 301
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFV +++ E A KAV E+N + K LYV AQ+K +R+ L
Sbjct: 304 GFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEEL 346
Score = 31.5 bits (68), Expect = 0.14
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 379
GFV F S E A A+ +NG ++ K +YV + +R++
Sbjct: 211 GFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQS 251
Score = 30.3 bits (65), Expect = 0.31
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 10 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 117
+ ++ GKPLYV AQ+K R+ +L+ + + RL
Sbjct: 426 QRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRL 461
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 47.2 bits (107), Expect = 3e-06
Identities = 21/44 (47%), Positives = 30/44 (68%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLT 388
GFV FS P EA +A+ +NG + G K L+V A+++EDRK L+
Sbjct: 465 GFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKREDRKKRLS 508
Score = 29.9 bits (64), Expect = 0.41
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +1
Query: 136 NLYVKNLDDTI--DDERLRKEFAPFGTITS 219
NL+VKNLDD I + ++L + F+ FG I S
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKS 449
Score = 29.5 bits (63), Expect = 0.55
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 103 KSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTIT 216
K++R T+ +++YV NL T L + F PFG +
Sbjct: 10 KNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFS 47
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 373
GFV F E A +A +NG +VG K ++V A+RK DR
Sbjct: 428 GFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERKSDR 466
Score = 34.3 bits (75), Expect = 0.019
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = +1
Query: 136 NLYVKNLDDTI--DDERLRKEFAPFGTITSA 222
NLYVKNLDDT+ +L F+PFG+I S+
Sbjct: 383 NLYVKNLDDTVITCKSQLEDLFSPFGSILSS 413
Score = 28.7 bits (61), Expect = 0.96
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 139 LYVKNLDDTIDDERLRKEFAPFGTITS 219
+YV N+D + DE + K F+ +G + S
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVES 45
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 376
GFV F++ E+ ++A+ EMNG+ VG L V A +ED++
Sbjct: 261 GFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQ 300
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +2
Query: 254 LGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 373
+ FV F++ E+ KA+ +NG+ + + + V A+ +++
Sbjct: 91 IAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARPVQEQ 130
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 33.1 bits (72), Expect = 0.044
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Frame = +1
Query: 49 AQKKAERQKELKRKFEQLKSERLTRY--------QGVNLYVKNLDDTIDDERLRKEFAPF 204
++ ++ + E KRK E ER + + ++V L +DD+ L +EF +
Sbjct: 227 SESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEY 286
Query: 205 GTITSAKVML--EDGRIK 252
GTI A+V++ + GR K
Sbjct: 287 GTIVGARVIMDGQSGRSK 304
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 32.3 bits (70), Expect = 0.078
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 136 NLYVKNLDDTIDDERLRKEFAPFGTI 213
N+Y+ N DD++ ERL+++F FG I
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEI 440
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 31.9 bits (69), Expect = 0.10
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 10 KELVEGKPLYV---GRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 180
KEL+E K A K Q++L + E L++++ + ++YV N+D ++ E
Sbjct: 12 KELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKES-IDAQSVYVGNVDYSVTPEE 70
Query: 181 LRKEFAPFGTITSAKVMLE 237
L+ FA G++ ++ +
Sbjct: 71 LQSHFASCGSVNRVTILCD 89
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 30.7 bits (66), Expect = 0.24
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 373
GFV + S E A A+ MN + + KP+ V+ A ++E +
Sbjct: 143 GFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGK 181
Score = 29.9 bits (64), Expect = 0.41
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 130 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRIK 252
G NL+V NLD +D+ L F+ G + A + E+GR K
Sbjct: 98 GANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSK 140
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 30.3 bits (65), Expect = 0.31
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 355
GFV F ++ KA E NG+ +G++P+ ++ A
Sbjct: 73 GFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRA 105
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 29.5 bits (63), Expect = 0.55
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 251 RLGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 364
+ GFV FSS +E A+ M G + +PL +++A K
Sbjct: 225 KYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPK 262
Score = 29.1 bits (62), Expect = 0.72
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 349
GFV +S A KA+ M G +VGT + +A
Sbjct: 335 GFVQYSEKSAAEKAINTMQGALVGTSHIRLA 365
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.1 bits (62), Expect = 0.72
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 82 KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTI 213
K+ FEQ+KS+ +L V N+D T+++ RLR F +G +
Sbjct: 865 KKSFEQIKSK--------SLGVTNVDGTVNEARLRSLFESYGKL 900
Score = 28.7 bits (61), Expect = 0.96
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 124 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 228
Y+G LYV N+D ++++ + F +G + S ++
Sbjct: 754 YEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRI 788
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 361
GF+ FS+ EEAT A+ +N + + L V A+R
Sbjct: 145 GFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKR 179
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Frame = +1
Query: 64 ERQKELKRKFEQL--KSERLTRYQGVNL--YVKNLDDTID 171
++++ELK KFE+L K+ER R QG L + DD ID
Sbjct: 70 KKEEELKSKFEKLRQKNERRRRTQGKTLAETLAEEDDQID 109
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 396 TCREWLVCACSKWAKYSSLVVQVDFLYHRSLQH 494
T + +C C + ++ ++VQV LY ++L H
Sbjct: 288 TYENYYLCECDAFFLFTQMMVQVRDLYEKTLDH 320
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +1
Query: 76 ELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLR-----KEFAPFGTITSAKVMLED 240
E + F+Q E ++ +NLY + DD D+E + + PF + S K ++ D
Sbjct: 186 EERAAFKQQIREEFVKHD-INLYPYDSDDA-DEEEINLNAAVRNLIPFAVVGSEKAIIVD 243
Query: 241 GR 246
GR
Sbjct: 244 GR 245
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/86 (19%), Positives = 42/86 (48%)
Frame = +3
Query: 501 TMDSSNDSNKTYNSKVECTAPCKPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPI 680
T S + S+ + +S ++ S+ ++S+ ++ + + + + S+ +S + PI
Sbjct: 151 TTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPI 210
Query: 681 TGQQGVAAAAASIRPPLVSQSSRPAN 758
T + +++S S SSRP++
Sbjct: 211 TSSTSSSHSSSSSSSSSSSSSSRPSS 236
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 139 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRI 249
+YV L + I + LR F FG I +V GRI
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQVNNNSGRI 214
>SPCC584.14 |mug160||conserved eukaryotic
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 471 LYHRSLQHHVTMDSSNDSNKTYNSKVECTAPCKPSTQAASAYA---NMQPTYRPAPRAPA 641
LY R L +H T SNDS + ++ + S A+A + + + P P PA
Sbjct: 44 LYSRFLPYHFTESVSNDSFSSLPWQIFANSVAGNSPLQNEAWAFLMDNEDFFLPVPMNPA 103
Query: 642 QST 650
Q T
Sbjct: 104 QCT 106
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 564 CKPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARP-ITGQQGVAAAAASI 719
C+ Y QP+Y P P+ +T+ + L P +T G + A+SI
Sbjct: 261 CENFPTTVPNYPFQQPSYNPNALVPSYTTLVSQLPPSPCLTVSSGPLSTASSI 313
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/67 (25%), Positives = 27/67 (40%)
Frame = +3
Query: 555 TAPCKPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLV 734
T +T A+A Q + P P P + + P+ AAAA + PP
Sbjct: 345 TVQTTTTTTEAAAAQYPQAAFPPPPVMPQPAAAAVTT---PVAAPVAAAAAAVPVPPPAP 401
Query: 735 SQSSRPA 755
+ ++ PA
Sbjct: 402 APAAAPA 408
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 88 KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE--FAPFGTIT 216
KF Q+ T VN + NLD I+D + + + F P TIT
Sbjct: 418 KFAQVSDMCSTEIPWVNFFCDNLDICIEDVQFKSKAFFPPTVTIT 462
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 618 RPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIR----PPLVSQSSRPANY 761
R A AP ++ + TS + P T G A+ + PL SQSSR +NY
Sbjct: 17 RTAYAAPQRAAVDTSNVSPPSTQTGGYASKDTTSTYEGAQPLSSQSSRSSNY 68
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 94 EQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 228
E++ +E + +YVKNL+ + E +K F P SA +
Sbjct: 606 EKVGTEDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVI 650
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +3
Query: 417 CACSKWAKYSSLVVQVDFLYHRSLQHHVTMDSSNDSNKTYNSKVE 551
CA W + ++D LYH ++ + S +D++ T + + E
Sbjct: 422 CAGKVWVFHGCRDQELDELYHGEWENPLQKSSDDDASSTVSQQTE 466
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Frame = +3
Query: 477 HRSLQHHVTMDSSNDSNKTYNSKVECTAPC-KPSTQAASAYANMQPTYRPAPRAPAQSTI 653
H + Q D S + Y ++ P P Q + T++P PR P Q +
Sbjct: 673 HSNSQKTSKNDMSRNQRNKYAKEIMTGQPTLHPQGQLPIQNVEQRATHKPLPRPPVQ--V 730
Query: 654 RTSLGARPI 680
T RP+
Sbjct: 731 ETREPVRPV 739
>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 465
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/33 (24%), Positives = 18/33 (54%)
Frame = -1
Query: 636 ELSVLVCKWVAYLHMQMLLVC*AYRGLCIPPWS 538
E+++ +W + ++ +L+C GLC +S
Sbjct: 108 EMALYCFRWTGFTFIEGILICTGLTGLCFATFS 140
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 547 WNAQPPVSLAHKQHLHMQICNPLTDQ 624
WN P S+A QHL +++ + L+++
Sbjct: 190 WNLLPNTSMAGIQHLMLRVADDLSER 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,385
Number of Sequences: 5004
Number of extensions: 57373
Number of successful extensions: 241
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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