Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120052.Seq
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 109 2e-24
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.047
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 36 0.047
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 34 0.14
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.33
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 33 0.33
SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8) 32 0.58
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.58
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 31 0.77
SB_45343| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 30 2.4
SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_5695| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 29 3.1
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 29 4.1
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 29 4.1
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) 29 5.5
SB_21211| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_13859| Best HMM Match : Exonuc_VII_S (HMM E-Value=5.7) 29 5.5
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_12122| Best HMM Match : DUF573 (HMM E-Value=0.74) 29 5.5
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 28 7.2
SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027) 28 7.2
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012) 28 7.2
SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11) 28 9.5
SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047) 28 9.5
SB_19953| Best HMM Match : Trehalase (HMM E-Value=0.66) 28 9.5
SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 109 bits (263), Expect = 2e-24
Identities = 50/80 (62%), Positives = 67/80 (83%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 180
LNGKE + G+ L+ GRA+K+AER E+K + E+ + ER+ R+QGVNLY+KNLDD IDDER
Sbjct: 169 LNGKE-IGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVNLYIKNLDDPIDDER 227
Query: 181 LRKEFAPFGTITSAKVMLED 240
LR+EF+P+GTI+SAKVM +D
Sbjct: 228 LREEFSPYGTISSAKVMKDD 247
Score = 79.8 bits (188), Expect = 2e-15
Identities = 37/43 (86%), Positives = 41/43 (95%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQR+E+RKA L
Sbjct: 255 GFVCFSSPEEATKAVTEMNGRILISKPLYVALAQRREERKAQL 297
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/43 (39%), Positives = 29/43 (67%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFV F +PEEA +AV +NG+ +G + L+ A+++ +R A +
Sbjct: 152 GFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEV 194
Score = 39.5 bits (88), Expect = 0.003
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +1
Query: 16 LVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEF 195
L+ K ++VGR K ER +++ + ++ N+YVKN D +DDE++++
Sbjct: 80 LLNDKKVFVGRWMSKKERIEKMGTQPKKF----------TNVYVKNFGDDMDDEQMKEIC 129
Query: 196 APFGTITSAKVMLE-DGRIK 252
A G I S KVM + +G+ K
Sbjct: 130 AEAGKIVSLKVMTDPEGKSK 149
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKEL 81
+NG+ L+ KPLYV AQ++ ER+ +L
Sbjct: 272 MNGRILIS-KPLYVALAQRREERKAQL 297
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 35.5 bits (78), Expect = 0.047
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 130 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
G NL++ +L D L + F PFGT+ SAKV ++
Sbjct: 228 GSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFID 263
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 382
GFV + + A A+ MNG +G K L V L + K+ + +
Sbjct: 306 GFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKRPKDANRPY 347
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 178 RLRKEFAPFGTITSAKVMLE 237
RL + F PFGT+ SAKV ++
Sbjct: 277 RLMQTFQPFGTVISAKVFID 296
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 35.5 bits (78), Expect = 0.047
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 130 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
G NL++ +L D L + F PFGT+ SAKV ++
Sbjct: 276 GSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFID 311
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 382
GFV + + A A+ MNG +G K L V L + K+ + +
Sbjct: 321 GFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKRPKDANRPY 362
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 379
GFV F S EE KA+ E +G+ +P+ V AQ + +R A
Sbjct: 48 GFVTFGSKEEMEKAIDEFDGQDFDGRPMKVNQAQPRGERGA 88
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 358
GFV +++ E+A KA+ ++NG +G K L VA ++
Sbjct: 91 GFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSR 124
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 127 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 231
+G NLYV N+ + + RK F +G I + +++
Sbjct: 131 KGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLL 165
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 67 RQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 231
+ K LK F + S T + NLY+ L + +E + F PFG I ++KV+
Sbjct: 94 QNKTLKVSFARPSS---TEIKNANLYISGLPKDMKEEEVEALFKPFGKIITSKVL 145
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 260 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 358
FV + +P++A KAV EMNG + K L V+ A+
Sbjct: 72 FVNYDNPDDANKAVREMNGARLQNKTLKVSFAR 104
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 32.7 bits (71), Expect = 0.33
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 130 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 240
G NL++ NLD +D++ L F+ FG I ++ D
Sbjct: 99 GANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRD 135
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +2
Query: 260 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 373
F+ F+S + + A+ MNG+ + +P+ V+ A +KE +
Sbjct: 146 FINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKESK 183
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 254 LGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 370
+GFV F PE A KA E++G + + L++ A+ K++
Sbjct: 284 IGFVTFLMPEHAVKAFNELDGTVFQGRLLHILPAKAKKE 322
Score = 32.3 bits (70), Expect = 0.44
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 127 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 228
+GV L+VKNL +E L+++FA G + SA +
Sbjct: 532 EGVTLFVKNLSFESTEEALKQKFAAVGPVKSATI 565
>SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)
Length = 922
Score = 31.9 bits (69), Expect = 0.58
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +3
Query: 510 SSNDSNKTYNSKVECTAPCKPSTQAASAYANMQP---TYRPAPRAPAQSTIRTSLGARPI 680
+S ++K+ S + P PS+Q A Q T P PR+P +S+ RP
Sbjct: 733 ASKSNSKSSLSSIPIRVPRPPSSQKTQANTASQASVDTASPLPRSPKRSSPILPPINRPA 792
Query: 681 TGQQGVAAAAASIRPPLVSQSSRP 752
+G++ +A+S RP VS+ S P
Sbjct: 793 SGRKS-TTSASSARP--VSRCSLP 813
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 349
GFV F++PE+A AV +NG+ V + L +A
Sbjct: 102 GFVTFANPEDAQTAVKSLNGKEVQGRTLKIA 132
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 370
GFV F S EE KA+ E +G+ + +P+ V A+ + D
Sbjct: 140 GFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKPRGD 177
>SB_45343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 528 KTYNSKVECTAPCKPST 578
K YNSKVEC CKP+T
Sbjct: 286 KFYNSKVECLKDCKPAT 302
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 364
GFV F + E A KA+ EMNG V + V++A+R+
Sbjct: 146 GFVTFDTWEAADKAIDEMNGLKVQHVHIRVSMARRQ 181
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 558 APCKPSTQAASAY---ANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPP 728
AP P+ A+AY A + PT PA PAQ+ + + A P T + + P
Sbjct: 1317 APANPTAAPATAYPAQAPVNPTAAPATAYPAQAPVNPT--AAPATAYPAQSPFNPTAAPA 1374
Query: 729 LVSQSSRPAN 758
+ PAN
Sbjct: 1375 TAYPAQAPAN 1384
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 373
GFV F S +E KA+ + +G + +P+ V AQ + +R
Sbjct: 53 GFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQPRGER 91
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 370
GFV F E+A KA+ EM+ +G K + A RK +
Sbjct: 557 GFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNN 594
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 136 NLYVKNLDDTIDDERLRKEFAPFGTITS 219
+++V +L + +D+ LRK F PFG I++
Sbjct: 459 HIFVGDLAENVDNALLRKTFEPFGEISA 486
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 364
GFV F++ EA KA ++NG IV + + V+L +
Sbjct: 127 GFVTFNTAAEANKAREKLNGTIVDGRKVEVSLCMEQ 162
>SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 477 HRSLQHHVTMDSSNDSNKTYNSKVECTAPCKPST 578
+R L++HV + + +K Y++KVE KPST
Sbjct: 236 YRKLRNHVNRERKSCRSKYYDAKVEHLKESKPST 269
>SB_5695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 453 VVQVDFLYHRSLQHHVTMDSSNDSNKTYNSKVECTAPCKPST 578
+ Q D +R ++ V + + K YNSKV C CKP+T
Sbjct: 487 LAQADQDRYRLFRNCVNRERNVCRAKFYNSKVVCLKDCKPAT 528
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 382
GFV F E A +A+ +MNG + +PL + + D A+
Sbjct: 286 GFVQFREAEAAKRAMEQMNGFELAGRPLKIGPVTERGDSSAY 327
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 103 KSERLTRYQG-VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
++ERL + G LYV +L I + ++ F PFGT+ S +++ +
Sbjct: 231 EAERLKQPLGPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYD 276
>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 501 TMDSSNDSNKTYNSKVECTAPCKPSTQAASAYANM 605
T D + ++T + K+EC P P +AAS ++M
Sbjct: 430 TADDDEECDETSDGKMECEPPLDPPMKAASIASSM 464
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +1
Query: 10 KELVEGKPLYVGR-AQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLR 186
+ L K +Y +Q+K + R F L S+ + +++ L+ +E L+
Sbjct: 8 RRLTSSKIIYPESCSQRKPFQCFSASRPFALLPSKMSESEKLRKIFIGGLNWNTTEEGLK 67
Query: 187 KEFAPFGTITSAKVMLEDGR 246
F+ +GTI +M DGR
Sbjct: 68 DYFSQWGTIVDCVIMKRDGR 87
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 10 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRK 189
K+ E K + + A+K+ + +KE K K E+ + ER R Y + + + +R R+
Sbjct: 747 KDRKERKKIEMEEAKKREQEEKERKEKEEKERIEREEREAKEREYAERIAKQNEIDRKRR 806
Query: 190 E 192
E
Sbjct: 807 E 807
>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
Length = 287
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 558 APCKPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRP-PLV 734
AP + +A A Q PAP A A + + + P AAA A +R P
Sbjct: 76 APAQAFAPSAPLAAPAQVAAAPAPAAAAPAPVPAAAAPAPAPAAPSAAAAPAPVRSVPST 135
Query: 735 SQSS 746
S SS
Sbjct: 136 SPSS 139
>SB_21211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 465 DFLYHRSLQHHVTMDSSNDSNKTYNSKVECTAPCKPSTQ 581
DF H HVT D+ ND++ ++S E + P TQ
Sbjct: 335 DFSSHTDSNDHVTSDTQNDAD--FSSNTESSDRLNPDTQ 371
>SB_13859| Best HMM Match : Exonuc_VII_S (HMM E-Value=5.7)
Length = 198
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 64 ERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 177
E ++ELK K E+LK E+L Q V + + DD DD+
Sbjct: 35 EEKEELKSKCEKLKEEKLKMEQVVWWWDEYGDDDDDDD 72
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 376
GFV S ++ A+ +MN VG + + VALA K + +
Sbjct: 52 GFVLLQSADQIAPAIEKMNQSSVGGRNITVALALDKTENR 91
>SB_12122| Best HMM Match : DUF573 (HMM E-Value=0.74)
Length = 67
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 49 AQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTID 171
A++K K K K+ Q+K+ T++ YVKN+ D
Sbjct: 18 ARRKTSLIKNFKTKYRQIKNRLNTKFSRSIRYVKNIGKAFD 58
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 370
GFV F + + A +AV + +GRI+ K + V + + D
Sbjct: 83 GFVQFETEKGADEAVAKEHGRIINGKKIDVRIVNSRAD 120
>SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)
Length = 253
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 260 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 376
+V F E+A KAV ++N R +P+Y L+ + R+
Sbjct: 116 YVKFRYEEDAEKAVNDLNNRWYNGQPIYAELSPVTDFRR 154
>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
Length = 1348
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Frame = +3
Query: 561 PCKPST----QAASAYANMQPTYRPAPRAPAQSTIRTS-LGARPITGQQGVAAAAASIRP 725
P +PS Q S Y P P PR PA+ + RPI+G+ + P
Sbjct: 338 PAEPSAFSDVQRPSVYEIAPP---PRPRLPAREPVAEGGQEGRPISGEGPRHGSLIKEEP 394
Query: 726 PLVSQSSRPAN 758
P Q +RP N
Sbjct: 395 PRPPQKTRPMN 405
>SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11)
Length = 606
Score = 27.9 bits (59), Expect = 9.5
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +2
Query: 698 CCCCCIYSSTFSISKQSPS 754
CCCCC + F K P+
Sbjct: 513 CCCCCFFCFNFCCGKCKPN 531
>SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +3
Query: 390 LSTCREWLVCACSKWAKYSSLVVQVDFLYHRSLQHHVTMDSSNDSNKTYNSKVECTAPCK 569
L + + L+C + + S Q D + L++HV + K Y SKVE C+
Sbjct: 197 LRSTKRVLLCRSTWKNERQSAFAQGDHAEFKRLRNHVNRLRKSCREKYYTSKVEHLRNCE 256
Query: 570 P 572
P
Sbjct: 257 P 257
>SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047)
Length = 841
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 46 RAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE 192
R +++AE K QL+ ERL + V + + +T RLR+E
Sbjct: 580 RDRERAESASSKSEKVAQLREERLQSRERVQAFKTDYQETTLRRRLREE 628
>SB_19953| Best HMM Match : Trehalase (HMM E-Value=0.66)
Length = 1097
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 426 SKWAKYSSLVVQVDFLYHRSLQHHVTMDSSNDSNKTYNSKVECTAPCKPST 578
S+W S + D +R L++ V + + +K Y++KVE KPST
Sbjct: 588 SEWGTIPSALGNQD--QYRKLRNRVNRERKSCRSKYYDAKVEHLKESKPST 636
>SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1748
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 52 QKKAERQKELKRKFEQLKSERLTRYQGVNLY-VKNLDDTIDDERLRKEFA 198
Q +E KEL +QL+ + +YQG +LY KN T+ + R A
Sbjct: 552 QDLSETNKELASYIDQLERSQNLQYQGKSLYKAKNKQRTLKEFLSRANLA 601
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,694,185
Number of Sequences: 59808
Number of extensions: 475041
Number of successful extensions: 1571
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1567
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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