Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120052.Seq
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 99 2e-21
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 99 2e-21
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 99 2e-21
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 99 2e-21
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 97 9e-21
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 97 9e-21
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 36 0.024
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 36 0.024
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 36 0.024
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 36 0.024
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 36 0.041
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 36 0.041
U80455-3|AAO38606.1| 145|Caenorhabditis elegans Elav-type rna b... 35 0.055
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 35 0.055
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 35 0.055
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 35 0.055
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 35 0.055
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 35 0.055
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 33 0.22
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 33 0.29
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.39
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.39
AF016451-3|AAB66001.1| 388|Caenorhabditis elegans Prion-like-(q... 32 0.39
AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in ... 31 0.68
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 31 0.68
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 30 1.6
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 30 1.6
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 30 2.1
Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical p... 30 2.1
Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical pr... 29 2.7
AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical ... 29 2.7
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 29 2.7
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 29 2.7
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 29 2.7
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 29 3.6
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 29 3.6
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 29 3.6
AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain, ... 29 4.8
Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 28 6.3
AC024845-3|AAF60852.1| 619|Caenorhabditis elegans Hypothetical ... 28 6.3
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr... 28 8.3
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 28 8.3
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 28 8.3
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 28 8.3
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 28 8.3
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 28 8.3
AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical ... 28 8.3
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 99 bits (238), Expect = 2e-21
Identities = 48/74 (64%), Positives = 61/74 (82%), Gaps = 1/74 (1%)
Frame = +1
Query: 34 LYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTI 213
L+V RAQKK+ER ELK+K EQ K+ER+ +YQGVNLYVKNLD+T+DD+ L+K+F +G I
Sbjct: 284 LHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNI 343
Query: 214 TSAKVML-EDGRIK 252
TSAKVM E+GR K
Sbjct: 344 TSAKVMTDENGRSK 357
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/43 (72%), Positives = 36/43 (83%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFVCF PEEAT AVTEMN ++V +KPLYVA+ QRKEDR+A L
Sbjct: 360 GFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIGQRKEDRRAQL 402
Score = 54.8 bits (126), Expect = 6e-08
Identities = 34/84 (40%), Positives = 47/84 (55%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 180
+NG L+ GK ++VG+ Q +A+R +EL T Q N+YVKN D + E
Sbjct: 180 VNGM-LLAGKKVFVGKFQPRAQRNRELGE----------TAKQFTNVYVKNFGDHYNKET 228
Query: 181 LRKEFAPFGTITSAKVMLEDGRIK 252
L K FA FG ITS +VM +G+ K
Sbjct: 229 LEKVFAKFGNITSCEVMTVEGKSK 252
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +1
Query: 136 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDG 243
N+++KNLD ID++ + F+ FG I S KV + EDG
Sbjct: 121 NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDG 157
Score = 35.5 bits (78), Expect = 0.041
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEM-NGRIVGTK-PLYVALAQRKEDRKAHL 385
GFV F++PEEA AV + + I GT L+V AQ+K +R A L
Sbjct: 255 GFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAEL 299
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFV F + E A A+ ++NG ++ K ++V Q + R L
Sbjct: 163 GFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNREL 205
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 99 bits (238), Expect = 2e-21
Identities = 48/74 (64%), Positives = 61/74 (82%), Gaps = 1/74 (1%)
Frame = +1
Query: 34 LYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTI 213
L+V RAQKK+ER ELK+K EQ K+ER+ +YQGVNLYVKNLD+T+DD+ L+K+F +G I
Sbjct: 224 LHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNI 283
Query: 214 TSAKVML-EDGRIK 252
TSAKVM E+GR K
Sbjct: 284 TSAKVMTDENGRSK 297
Score = 72.1 bits (169), Expect = 4e-13
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFVCF PEEAT AVTEMN ++V +KPLYVA+AQRKEDR+A L
Sbjct: 300 GFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQL 342
Score = 48.4 bits (110), Expect = 6e-06
Identities = 29/73 (39%), Positives = 40/73 (54%)
Frame = +1
Query: 34 LYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTI 213
++VG+ Q +A+R +EL T Q N+YVKN D + E L K FA FG I
Sbjct: 130 VFVGKFQPRAQRNRELGE----------TAKQFTNVYVKNFGDHYNKETLEKLFAKFGNI 179
Query: 214 TSAKVMLEDGRIK 252
TS +VM +G+ K
Sbjct: 180 TSCEVMTVEGKSK 192
Score = 35.5 bits (78), Expect = 0.041
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEM-NGRIVGTK-PLYVALAQRKEDRKAHL 385
GFV F++PEEA AV + + I GT L+V AQ+K +R A L
Sbjct: 195 GFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAEL 239
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKF-EQLKSERL 117
+N K +V KPLYV AQ+K +R+ +L ++ ++L S R+
Sbjct: 317 MNSK-MVCSKPLYVAIAQRKEDRRAQLASQYMQRLASMRM 355
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 99 bits (238), Expect = 2e-21
Identities = 48/74 (64%), Positives = 61/74 (82%), Gaps = 1/74 (1%)
Frame = +1
Query: 34 LYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTI 213
L+V RAQKK+ER ELK+K EQ K+ER+ +YQGVNLYVKNLD+T+DD+ L+K+F +G I
Sbjct: 221 LHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNI 280
Query: 214 TSAKVML-EDGRIK 252
TSAKVM E+GR K
Sbjct: 281 TSAKVMTDENGRSK 294
Score = 72.1 bits (169), Expect = 4e-13
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFVCF PEEAT AVTEMN ++V +KPLYVA+AQRKEDR+A L
Sbjct: 297 GFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQL 339
Score = 54.4 bits (125), Expect = 8e-08
Identities = 34/84 (40%), Positives = 47/84 (55%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 180
+NG L+ GK ++VG+ Q +A+R +EL T Q N+YVKN D + E
Sbjct: 117 VNGM-LLAGKKVFVGKFQPRAQRNRELGE----------TAKQFTNVYVKNFGDHYNKET 165
Query: 181 LRKEFAPFGTITSAKVMLEDGRIK 252
L K FA FG ITS +VM +G+ K
Sbjct: 166 LEKLFAKFGNITSCEVMTVEGKSK 189
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +1
Query: 136 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDG 243
N+++KNLD ID++ + F+ FG I S KV + EDG
Sbjct: 58 NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDG 94
Score = 35.5 bits (78), Expect = 0.041
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEM-NGRIVGTK-PLYVALAQRKEDRKAHL 385
GFV F++PEEA AV + + I GT L+V AQ+K +R A L
Sbjct: 192 GFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAEL 236
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFV F + E A A+ ++NG ++ K ++V Q + R L
Sbjct: 100 GFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNREL 142
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKF-EQLKSERL 117
+N K +V KPLYV AQ+K +R+ +L ++ ++L S R+
Sbjct: 314 MNSK-MVCSKPLYVAIAQRKEDRRAQLASQYMQRLASMRM 352
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 99 bits (238), Expect = 2e-21
Identities = 48/74 (64%), Positives = 61/74 (82%), Gaps = 1/74 (1%)
Frame = +1
Query: 34 LYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTI 213
L+V RAQKK+ER ELK+K EQ K+ER+ +YQGVNLYVKNLD+T+DD+ L+K+F +G I
Sbjct: 284 LHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNI 343
Query: 214 TSAKVML-EDGRIK 252
TSAKVM E+GR K
Sbjct: 344 TSAKVMTDENGRSK 357
Score = 72.1 bits (169), Expect = 4e-13
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFVCF PEEAT AVTEMN ++V +KPLYVA+AQRKEDR+A L
Sbjct: 360 GFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQL 402
Score = 54.4 bits (125), Expect = 8e-08
Identities = 34/84 (40%), Positives = 47/84 (55%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 180
+NG L+ GK ++VG+ Q +A+R +EL T Q N+YVKN D + E
Sbjct: 180 VNGM-LLAGKKVFVGKFQPRAQRNRELGE----------TAKQFTNVYVKNFGDHYNKET 228
Query: 181 LRKEFAPFGTITSAKVMLEDGRIK 252
L K FA FG ITS +VM +G+ K
Sbjct: 229 LEKLFAKFGNITSCEVMTVEGKSK 252
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +1
Query: 136 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDG 243
N+++KNLD ID++ + F+ FG I S KV + EDG
Sbjct: 121 NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDG 157
Score = 35.5 bits (78), Expect = 0.041
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEM-NGRIVGTK-PLYVALAQRKEDRKAHL 385
GFV F++PEEA AV + + I GT L+V AQ+K +R A L
Sbjct: 255 GFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAEL 299
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFV F + E A A+ ++NG ++ K ++V Q + R L
Sbjct: 163 GFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNREL 205
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKF-EQLKSERL 117
+N K +V KPLYV AQ+K +R+ +L ++ ++L S R+
Sbjct: 377 MNSK-MVCSKPLYVAIAQRKEDRRAQLASQYMQRLASMRM 415
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 97.5 bits (232), Expect = 9e-21
Identities = 48/74 (64%), Positives = 60/74 (81%), Gaps = 1/74 (1%)
Frame = +1
Query: 34 LYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTI 213
L V RAQKK+ER ELKRK+E LK ER+ RYQGVNLYVKN+++ ++D+ LR F+ FGTI
Sbjct: 310 LSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTI 369
Query: 214 TSAKVML-EDGRIK 252
TSAKVM+ E+GR K
Sbjct: 370 TSAKVMVDENGRSK 383
Score = 74.1 bits (174), Expect = 1e-13
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFVCF PEEAT AVT+MN +++G KPLYVALAQRKEDR+A L
Sbjct: 386 GFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQL 428
Score = 48.0 bits (109), Expect = 7e-06
Identities = 31/79 (39%), Positives = 45/79 (56%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 180
+NG L+ K +YVG+ Q +A+R KEL E +Y N++VKN + +D E+
Sbjct: 205 VNGM-LLSDKKVYVGKFQPRAQRMKEL--------GESGLKY--TNVFVKNFGEHLDQEK 253
Query: 181 LRKEFAPFGTITSAKVMLE 237
L F+ FG ITSA VM +
Sbjct: 254 LSAMFSKFGEITSAVVMTD 272
Score = 35.9 bits (79), Expect = 0.031
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 136 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 240
N+++KNLD ID++ + F+ FG I S KV +D
Sbjct: 146 NIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDD 180
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFV F + A A+ ++NG ++ K +YV Q + R L
Sbjct: 188 GFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKEL 230
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQ 99
+N K ++ KPLYV AQ+K +R+ +L ++ Q
Sbjct: 403 MNSK-MIGAKPLYVALAQRKEDRRAQLASQYMQ 434
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 97.5 bits (232), Expect = 9e-21
Identities = 48/74 (64%), Positives = 60/74 (81%), Gaps = 1/74 (1%)
Frame = +1
Query: 34 LYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTI 213
L V RAQKK+ER ELKRK+E LK ER+ RYQGVNLYVKN+++ ++D+ LR F+ FGTI
Sbjct: 310 LSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTI 369
Query: 214 TSAKVML-EDGRIK 252
TSAKVM+ E+GR K
Sbjct: 370 TSAKVMVDENGRSK 383
Score = 74.1 bits (174), Expect = 1e-13
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFVCF PEEAT AVT+MN +++G KPLYVALAQRKEDR+A L
Sbjct: 386 GFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQL 428
Score = 48.0 bits (109), Expect = 7e-06
Identities = 31/79 (39%), Positives = 45/79 (56%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 180
+NG L+ K +YVG+ Q +A+R KEL E +Y N++VKN + +D E+
Sbjct: 205 VNGM-LLSDKKVYVGKFQPRAQRMKEL--------GESGLKY--TNVFVKNFGEHLDQEK 253
Query: 181 LRKEFAPFGTITSAKVMLE 237
L F+ FG ITSA VM +
Sbjct: 254 LSAMFSKFGEITSAVVMTD 272
Score = 35.9 bits (79), Expect = 0.031
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 136 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 240
N+++KNLD ID++ + F+ FG I S KV +D
Sbjct: 146 NIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDD 180
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFV F + A A+ ++NG ++ K +YV Q + R L
Sbjct: 188 GFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKEL 230
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQ 99
+N K ++ KPLYV AQ+K +R+ +L ++ Q
Sbjct: 403 MNSK-MIGAKPLYVALAQRKEDRRAQLASQYMQ 434
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 36.3 bits (80), Expect = 0.024
Identities = 13/41 (31%), Positives = 28/41 (68%)
Frame = +1
Query: 136 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRIKAR 258
+++V +L +D+++LR+ F PFG ++ AKV+ + K++
Sbjct: 23 HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSK 63
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 364
GFV + EEA +A+ +MNG+ +G + + A RK
Sbjct: 66 GFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRK 101
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 36.3 bits (80), Expect = 0.024
Identities = 13/41 (31%), Positives = 28/41 (68%)
Frame = +1
Query: 136 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRIKAR 258
+++V +L +D+++LR+ F PFG ++ AKV+ + K++
Sbjct: 33 HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSK 73
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 364
GFV + EEA +A+ +MNG+ +G + + A RK
Sbjct: 76 GFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRK 111
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 36.3 bits (80), Expect = 0.024
Identities = 13/41 (31%), Positives = 28/41 (68%)
Frame = +1
Query: 136 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRIKAR 258
+++V +L +D+++LR+ F PFG ++ AKV+ + K++
Sbjct: 136 HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSK 176
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 364
GFV + EEA +A+ +MNG+ +G + + A RK
Sbjct: 179 GFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRK 214
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 139 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
LYV NLD T+ ++ + F G++T KV+ +
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD 80
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 36.3 bits (80), Expect = 0.024
Identities = 13/41 (31%), Positives = 28/41 (68%)
Frame = +1
Query: 136 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRIKAR 258
+++V +L +D+++LR+ F PFG ++ AKV+ + K++
Sbjct: 104 HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSK 144
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 364
GFV + EEA +A+ +MNG+ +G + + A RK
Sbjct: 147 GFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRK 182
Score = 31.5 bits (68), Expect = 0.68
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 139 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRI 249
LYV NLD T+ ++ + F G++T KV+ ++ ++
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEMKV 84
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 35.5 bits (78), Expect = 0.041
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +1
Query: 49 AQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 228
A + A+ Q++ + + G NL++ +L D L + FAPFG I SAKV
Sbjct: 401 ALQLAQIQQQAAAALPMVTPREVLGPDGCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKV 460
Query: 229 MLE 237
++
Sbjct: 461 FVD 463
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ-RKEDR 373
GFV + + + A+T MNG +G K L V L + R E R
Sbjct: 473 GFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKRPRNESR 512
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 35.5 bits (78), Expect = 0.041
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +1
Query: 49 AQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 228
A + A+ Q++ + + G NL++ +L D L + FAPFG I SAKV
Sbjct: 401 ALQLAQIQQQAAAALPMVTPREVLGPDGCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKV 460
Query: 229 MLE 237
++
Sbjct: 461 FVD 463
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ-RKEDR 373
GFV + + + A+T MNG +G K L V L + R E R
Sbjct: 473 GFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKRPRNESR 512
>U80455-3|AAO38606.1| 145|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform c protein.
Length = 145
Score = 35.1 bits (77), Expect = 0.055
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 130 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
G NL++ +L D L FAPFG I SAKV ++
Sbjct: 75 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFID 110
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 35.1 bits (77), Expect = 0.055
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 130 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
G NL++ +L D L FAPFG I SAKV ++
Sbjct: 334 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFID 369
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 352
GFV + + + AT A++ MNG +G+K L V L
Sbjct: 379 GFVSYENAQSATNAISAMNGFQIGSKRLKVQL 410
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.055
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 130 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
G NL++ +L D L FAPFG I SAKV ++
Sbjct: 498 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFID 533
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 352
GFV + + + AT A++ MNG +G+K L V L
Sbjct: 543 GFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.055
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 130 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
G NL++ +L D L FAPFG I SAKV ++
Sbjct: 498 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFID 533
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 352
GFV + + + AT A++ MNG +G+K L V L
Sbjct: 543 GFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 35.1 bits (77), Expect = 0.055
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 130 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
G NL++ +L D L FAPFG I SAKV ++
Sbjct: 427 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFID 462
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 352
GFV + + + AT A++ MNG +G+K L V L
Sbjct: 472 GFVSYENAQSATNAISAMNGFQIGSKRLKVQL 503
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.055
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 130 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
G NL++ +L D L FAPFG I SAKV ++
Sbjct: 498 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFID 533
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 352
GFV + + + AT A++ MNG +G+K L V L
Sbjct: 543 GFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 367
GFV F E+ +A+ EM+G+ VG +P+ + + KE
Sbjct: 247 GFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWKE 283
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 370
GFV + E+A +A+ EMNG +G + + A RK D
Sbjct: 176 GFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPD 213
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 139 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
L+V NLD I DE L F G + AK++ E
Sbjct: 42 LFVANLDPAITDEFLATLFNQIGAVMKAKIIFE 74
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 130 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 240
G N++V NLD +D++ L F+ FG I ++ D
Sbjct: 99 GANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRD 135
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 130 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 240
G N++V NLD +D++ L F+ FG I ++ D
Sbjct: 109 GANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRD 145
>AF016451-3|AAB66001.1| 388|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 5
protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = +3
Query: 471 LYHRSLQHHVTMDSSNDSNKTYNSKVECTAPCKPSTQAASAYANMQPTYRP---APRAPA 641
+Y++++ + N N N C C+P+ + QP Y+P APA
Sbjct: 241 VYNQNMNQNTNTQMYNPYNTNTNQNANCAPACQPACDNSCTSQQTQPMYQPYDTTTEAPA 300
Query: 642 Q 644
Q
Sbjct: 301 Q 301
>AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 7 protein.
Length = 438
Score = 31.5 bits (68), Expect = 0.68
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Frame = +3
Query: 471 LYHRSLQHHVTMDSSNDSNKTYNSKVECTAPCKPSTQAASAYANMQPTYRPA-PRAPAQS 647
+Y++++ + N N N C C+P+ + QP Y+ A P Q
Sbjct: 241 VYNQNMNQNTNTQMYNPYNTNTNQNANCAPACQPACDNSCTSQQAQPVYQQAQPTYQVQQ 300
Query: 648 TIRTSLGARPITGQQGVAAAAASIRP 725
T T+ QG A A + +P
Sbjct: 301 T--TAAPMYDPYNNQGSANCAPACQP 324
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 597 ANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRP 752
A P PA A Q + A P G QG AAA A+ PP + ++ P
Sbjct: 329 AGAAPEAAPAAAAAPQPAPAPAAAAAPAGGYQGGAAAGAAAPPPAPAAAAAP 380
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 139 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 240
LYV NLD T+ ++ + F G++T KV+ ++
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE 81
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK--EDRKAHLT 388
GFV F + + A A+ MNG+ +G + + A RK E+ + LT
Sbjct: 179 GFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLT 224
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA-QRKEDRKA 379
GFV +P++A +A E NG + + + V LA QR ++KA
Sbjct: 24 GFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQRVHNKKA 65
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA-QRKEDRKA 379
GFV +P++A +A E NG + + + V LA QR ++KA
Sbjct: 142 GFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQRVHNKKA 183
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA-QRKEDRKA 379
GFV +P++A +A E NG + + + V LA QR ++KA
Sbjct: 142 GFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQRVHNKKA 183
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 118 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSA-KVMLEDGRIK 252
T + ++V+N+ D+ L+ F+ FGT+TS +V +DG+ K
Sbjct: 678 TTLEKSKVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPK 723
>Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Frame = +3
Query: 522 SNKTYNSKVECTAPCKPSTQAASAYA---NMQPT---YRPAPRAPAQSTIRTSLGARPIT 683
+ KT + + + +AASA A N P +P+P APA + +R A+P
Sbjct: 205 TEKTEKAVLRIPSSASTRAKAASAVAPEANPAPVPTATKPSPFAPAIAPLRDGAPAQPPA 264
Query: 684 GQQGVAAAAASIRPPLVSQSS 746
Q A+A +RPP+ Q+S
Sbjct: 265 PIQ----ASAPLRPPVAKQNS 281
>Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Frame = +3
Query: 522 SNKTYNSKVECTAPCKPSTQAASAYA---NMQPT---YRPAPRAPAQSTIRTSLGARPIT 683
+ KT + + + +AASA A N P +P+P APA + +R A+P
Sbjct: 205 TEKTEKAVLRIPSSASTRAKAASAVAPEANPAPVPTATKPSPFAPAIAPLRDGAPAQPPA 264
Query: 684 GQQGVAAAAASIRPPLVSQSS 746
Q A+A +RPP+ Q+S
Sbjct: 265 PIQ----ASAPLRPPVAKQNS 281
>Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical
protein F43D9.2 protein.
Length = 307
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +3
Query: 438 KYSSLVVQVDFLYHRSLQHHVTMDSSNDSNKTYNSKVECTAPCKPSTQAASAYANMQPTY 617
++S+ +D H + H + +++ T+ S + +P PST Y P
Sbjct: 12 QFSTYATVIDPPKHVTATHPDELTTASHPQPTHPSAPQDPSPAVPSTPVRVPYPTAPPPI 71
Query: 618 RPAPRA 635
PAP A
Sbjct: 72 PPAPEA 77
>AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical
protein Y56A3A.6 protein.
Length = 798
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +3
Query: 516 NDSNKTYNSKVECTAPCKPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQG 695
++S + + AP P AA+A A + P P P++PA + + P Q
Sbjct: 119 DESPIVQKQRTKRAAPPPPPPPAAAAAAPISPKAAPTPQSPAPNRV-------PHYRQTS 171
Query: 696 VAAAAASIRPP 728
A+ +++I PP
Sbjct: 172 TASVSSTIPPP 182
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/54 (27%), Positives = 32/54 (59%)
Frame = +1
Query: 58 KAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITS 219
+ ++Q++ ++ +Q+ S+ L+ +YV ++ I ++ LR+ F PFG I S
Sbjct: 79 RQQKQQQENQQRQQMYSQALSIMS--RIYVGSISFEIREDMLRRAFDPFGPIKS 130
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/54 (27%), Positives = 32/54 (59%)
Frame = +1
Query: 58 KAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITS 219
+ ++Q++ ++ +Q+ S+ L+ +YV ++ I ++ LR+ F PFG I S
Sbjct: 79 RQQKQQQENQQRQQMYSQALSIMS--RIYVGSISFEIREDMLRRAFDPFGPIKS 130
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/54 (27%), Positives = 32/54 (59%)
Frame = +1
Query: 58 KAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITS 219
+ ++Q++ ++ +Q+ S+ L+ +YV ++ I ++ LR+ F PFG I S
Sbjct: 79 RQQKQQQENQQRQQMYSQALSIMS--RIYVGSISFEIREDMLRRAFDPFGPIKS 130
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +3
Query: 537 NSKVECTAPCKPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAAS 716
+S+ AP KP+ Q A P P+P PAQ A+P+T QQ A +
Sbjct: 391 SSQQATQAPPKPAPQQAPPVQQNPPKPTPSPAPPAQK-------AQPVTQQQASAPPTSP 443
Query: 717 IRP 725
P
Sbjct: 444 SAP 446
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 139 LYVKNLDDTIDDERLRKEFAPFGTITSAKV 228
L VKNL T +++LRK F +G I+ A +
Sbjct: 5 LIVKNLPSTCTEQQLRKFFEKYGQISDASL 34
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Frame = +3
Query: 474 YHRSLQHHVTMDSSNDSNKTYNSKVECTAPCKPSTQAASAYANMQPTYRPAPRAPAQSTI 653
Y R++ V + + + KT + AP S+ AA PT +PA PA
Sbjct: 165 YKRAVDKLVELIRAVERGKTIDESEIPVAPPNFSSAAAEPLPPPAPTAQPAHHPPAPPIR 224
Query: 654 RTSLGAR----PITGQQGVAAAAASIRPPLVSQSSRP 752
+ + A PI ++ A A + PP + + P
Sbjct: 225 QAAHAAESSPPPIPQRKSSAPAPTAAAPPATKEPTDP 261
>AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 8, isoform a protein.
Length = 1219
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/17 (64%), Positives = 16/17 (94%)
Frame = +1
Query: 49 AQKKAERQKELKRKFEQ 99
A+K+AERQ+E+KRK E+
Sbjct: 966 AKKEAERQREIKRKLEE 982
>Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical
protein F32A7.5c protein.
Length = 877
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 543 KVECTAPCKPSTQA-ASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASI 719
KV+ TAP KP+ A ASA + P R P TI P QG A +
Sbjct: 350 KVQGTAPSKPAPAAPASAATSPAPAPEAPRRDPNNVTIVLDDSLSPEDFNQGSAPMDIVV 409
Query: 720 RPP 728
PP
Sbjct: 410 IPP 412
>Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical
protein F32A7.5b protein.
Length = 764
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 543 KVECTAPCKPSTQA-ASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASI 719
KV+ TAP KP+ A ASA + P R P TI P QG A +
Sbjct: 350 KVQGTAPSKPAPAAPASAATSPAPAPEAPRRDPNNVTIVLDDSLSPEDFNQGSAPMDIVV 409
Query: 720 RPP 728
PP
Sbjct: 410 IPP 412
>Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical
protein F32A7.5a protein.
Length = 878
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 543 KVECTAPCKPSTQA-ASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASI 719
KV+ TAP KP+ A ASA + P R P TI P QG A +
Sbjct: 350 KVQGTAPSKPAPAAPASAATSPAPAPEAPRRDPNNVTIVLDDSLSPEDFNQGSAPMDIVV 409
Query: 720 RPP 728
PP
Sbjct: 410 IPP 412
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 127 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 240
+G NLYV + ++ L F PFG I +++++ ++
Sbjct: 126 KGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDN 163
>AC024845-3|AAF60852.1| 619|Caenorhabditis elegans Hypothetical
protein Y65B4BL.2 protein.
Length = 619
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 478 IAPSSTTLLWTAQMTQIRPTTPRWNAQPPVSL 573
I P+STT WT T P T A+P V L
Sbjct: 127 IQPTSTTSFWTPLCTVTMPETEATRAEPDVWL 158
>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
T13H2.5a protein.
Length = 2471
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 46 RAQKKAERQKEL-KRKFEQLKSERLTR 123
RAQ+KA+ QKEL R+ EQ + E L R
Sbjct: 1257 RAQQKAQTQKELAARQAEQARVEELAR 1283
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 139 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRIKAR 258
LYV + + ++ L + F +GT+T ++++L+ K R
Sbjct: 116 LYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPR 155
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 139 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRIKAR 258
LYV + + ++ L + F +GT+T ++++L+ K R
Sbjct: 78 LYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPR 117
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 139 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRIKAR 258
LYV + + ++ L + F +GT+T ++++L+ K R
Sbjct: 78 LYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPR 117
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 139 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRIKAR 258
LYV + + ++ L + F +GT+T ++++L+ K R
Sbjct: 116 LYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPR 155
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 139 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRIKAR 258
LYV + + ++ L + F +GT+T ++++L+ K R
Sbjct: 116 LYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPR 155
>AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical
protein Y65B4A.1 protein.
Length = 442
Score = 27.9 bits (59), Expect = 8.3
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Frame = +1
Query: 46 RAQKKAERQKELKRK-------FEQLKSERLTRYQGVN-LYVKNLDDTIDDERLRKEFAP 201
+AQK+ E +KE KRK E K L V+ +YV NL + I DE +K +
Sbjct: 142 KAQKEDEEKKEKKRKKKVGLGAGEDAKEGWLDLGDKVHAVYVSNLPEDITDEEFQKFMSK 201
Query: 202 FGTI 213
G I
Sbjct: 202 CGVI 205
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,465,789
Number of Sequences: 27780
Number of extensions: 337807
Number of successful extensions: 1420
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1413
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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