Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120052.Seq
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   7.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.1  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = +1

Query: 463 WIFCTIAPSSTTLLWTAQMTQIRPTTPRWNAQPPVSLAHKQHLHMQICN 609
           WI     P+  TL  T+ +T     T    + PPVS      + M  C+
Sbjct: 236 WIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCS 284


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +1

Query: 463 WIFCTIAPSSTTLLWTAQMTQIRPTTPRWNAQPPVSLAHKQHLHMQIC 606
           WI    AP+  TL  T+ +T          + PPVS        M +C
Sbjct: 267 WIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSVC 314


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 113 RSDFSCSNLRFNSF*RSAFFCARPT*RGLPSTSSLP 6
           R+D S S+   +S   + F+  +PT    P  S LP
Sbjct: 368 RTDISSSSSSISSSEENDFWQPKPTLEDAPQNSLLP 403


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 256 EPLYVHLLALPSQT**SQMVQILCADVHHQL 164
           EP+Y H + L S    S M + +C  + + +
Sbjct: 457 EPIYFHSIVLGSLLNPSHMYRAVCGRIENTI 487


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 499 LLWTAQMTQIRPTTPRWNAQPPVSL 573
           L+W + M  IR    +W  + P  L
Sbjct: 471 LVWNSWMPSIRGAIQQWTCRQPEPL 495


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/50 (24%), Positives = 21/50 (42%)
 Frame = +3

Query: 498  VTMDSSNDSNKTYNSKVECTAPCKPSTQAASAYANMQPTYRPAPRAPAQS 647
            V+  SS D  +  +  +  +     ST   +A+   QP   P P +  Q+
Sbjct: 1318 VSSGSSEDHRRPLSEHIYSSIDSDYSTLERTAWRQQQPPPPPPPPSSGQA 1367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,401
Number of Sequences: 438
Number of extensions: 4348
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)