Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120052.Seq
(762 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 96 2e-20
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 96 3e-20
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 95 3e-20
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 92 4e-19
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 89 4e-18
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 80 1e-15
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 69 3e-12
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 61 9e-10
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 36 0.022
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 36 0.022
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 36 0.039
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 36 0.039
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 35 0.051
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 35 0.051
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 35 0.051
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 35 0.068
At2g15500.1 68415.m01774 hypothetical protein 34 0.090
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 34 0.12
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 34 0.12
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 34 0.12
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 34 0.12
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 33 0.16
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 33 0.27
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 33 0.27
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 33 0.27
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 33 0.27
At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical t... 32 0.48
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 32 0.48
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 32 0.48
At1g06760.1 68414.m00718 histone H1, putative similar to histone... 32 0.48
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 31 0.63
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 31 0.84
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 31 0.84
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 31 1.1
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 31 1.1
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 31 1.1
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 30 1.5
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 30 1.5
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 30 1.5
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami... 26 1.7
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 30 1.9
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 30 1.9
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 30 1.9
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 30 1.9
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 30 1.9
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 30 1.9
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 2.6
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 2.6
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 29 2.6
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 29 2.6
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 29 2.6
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 29 2.6
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 29 2.6
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 29 2.6
At2g38250.1 68415.m04697 DNA-binding protein-related contains si... 29 2.6
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 29 3.4
At4g28690.1 68417.m04099 expressed protein 29 3.4
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 29 3.4
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 29 3.4
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 29 4.5
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 29 4.5
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 29 4.5
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 29 4.5
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 29 4.5
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 28 5.9
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 28 5.9
At3g25240.1 68416.m03153 hypothetical protein contains Pfam prof... 28 5.9
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 28 5.9
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 28 5.9
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 28 7.8
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 28 7.8
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 28 7.8
At4g27370.1 68417.m03929 myosin family protein contains Pfam pro... 28 7.8
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 28 7.8
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 28 7.8
At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative (CH... 28 7.8
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 28 7.8
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 28 7.8
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 28 7.8
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 96.3 bits (229), Expect = 2e-20
Identities = 46/77 (59%), Positives = 59/77 (76%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 180
LNGK + K +VG+AQKK+ER+ ELK+KFEQ E + QG NLYVKNLD+++ D++
Sbjct: 284 LNGKTF-DDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK 342
Query: 181 LRKEFAPFGTITSAKVM 231
LR+ FAPFGTITS KVM
Sbjct: 343 LREHFAPFGTITSCKVM 359
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/43 (79%), Positives = 40/43 (93%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFV FS+PEEAT+A+TEMNG+++ TKPLYVALAQRKEDRKA L
Sbjct: 370 GFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARL 412
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +1
Query: 136 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRIKAR 258
N+YVKNL +++ DE L K F FG TS V++ DG K++
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFGVTTSC-VIMRDGEGKSK 264
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFV F + ++A +AV +NG+ K +V AQ+K +R+ L
Sbjct: 267 GFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETEL 309
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 105
+NGK +V KPLYV AQ+K +R+ L+ +F Q++
Sbjct: 387 MNGKMIVT-KPLYVALAQRKEDRKARLQAQFSQMR 420
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYV 346
GFV + + E A A+ ++NG ++ K +YV
Sbjct: 176 GFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 95.9 bits (228), Expect = 3e-20
Identities = 46/77 (59%), Positives = 60/77 (77%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 180
LNGK+ + K YVG+AQKK+ER+ EL R++EQ S+ ++ G+NLYVKNLDDT+ DE+
Sbjct: 285 LNGKKF-DDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEK 343
Query: 181 LRKEFAPFGTITSAKVM 231
LR+ FA FGTITS KVM
Sbjct: 344 LRELFAEFGTITSCKVM 360
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFV FS+ EA++ + EMNG++VG KPLYVALAQRKE+R+A L
Sbjct: 371 GFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKL 413
Score = 42.3 bits (95), Expect = 3e-04
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKEL-KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 177
LNGK L + K ++VG +K ER+ K KF N+YVKNL + D+
Sbjct: 194 LNGKVLND-KQIFVGPFLRKEERESAADKMKF-------------TNVYVKNLSEATTDD 239
Query: 178 RLRKEFAPFGTITSAKVMLEDGRIKAR 258
L+ F +G+I+SA V++ DG K+R
Sbjct: 240 ELKTTFGQYGSISSA-VVMRDGDGKSR 265
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLT 388
GFV F +PE+A +AV +NG+ K YV AQ+K +R+ L+
Sbjct: 268 GFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELS 311
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 105
+NGK +V GKPLYV AQ+K ER+ +L+ +F Q++
Sbjct: 388 MNGK-MVGGKPLYVALAQRKEERRAKLQAQFSQMR 421
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = +1
Query: 121 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKV 228
R GV NL+VKNLD ++D++ L + F+ GTI S KV
Sbjct: 129 RRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV 165
Score = 36.3 bits (80), Expect = 0.022
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 379
GFV F + + A A+ ++NG+++ K ++V RKE+R++
Sbjct: 177 GFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERES 217
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 95.5 bits (227), Expect = 3e-20
Identities = 41/67 (61%), Positives = 57/67 (85%)
Frame = +1
Query: 34 LYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTI 213
LYVGRAQKK+ER++EL+RKFEQ + R + QG NLY+KNLDD++DDE+L++ F+ +G +
Sbjct: 299 LYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNV 358
Query: 214 TSAKVML 234
TS+KVML
Sbjct: 359 TSSKVML 365
Score = 73.3 bits (172), Expect = 2e-13
Identities = 30/43 (69%), Positives = 40/43 (93%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFV +S+PEEA +A++EMNG+++G KPLY+ALAQRKEDR+AHL
Sbjct: 375 GFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHL 417
Score = 44.0 bits (99), Expect = 1e-04
Identities = 30/77 (38%), Positives = 42/77 (54%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 180
LNG L+ K ++VG ++ ER ++ E + R T N+YVKNL I ++
Sbjct: 196 LNGM-LMNDKQVFVGHFIRRQERARD-----ENTPTPRFT-----NVYVKNLPKEIGEDE 244
Query: 181 LRKEFAPFGTITSAKVM 231
LRK F FG I+SA VM
Sbjct: 245 LRKTFGKFGVISSAVVM 261
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Frame = +1
Query: 118 TRYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRIK 252
TR G N+++KNLD +ID++ L + F+ FGTI S KV ++ GR K
Sbjct: 130 TRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSK 176
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/43 (46%), Positives = 25/43 (58%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFV F E A AV +MNG +G LYV AQ+K +R+ L
Sbjct: 272 GFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEEL 314
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS 108
+NGK ++ KPLY+ AQ+K +R+ L+ F Q+++
Sbjct: 392 MNGK-MIGRKPLYIALAQRKEDRRAHLQALFSQIRA 426
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 373
GFV F E A A+ ++NG ++ K ++V R+++R
Sbjct: 179 GFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER 217
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 91.9 bits (218), Expect = 4e-19
Identities = 42/78 (53%), Positives = 61/78 (78%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 180
+NG L E LYVGRAQKK++R++EL+RKFEQ + R + QG NLY+KNLDD+++DE+
Sbjct: 285 MNGISLGEDV-LYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 343
Query: 181 LRKEFAPFGTITSAKVML 234
L++ F+ +G +TS KVM+
Sbjct: 344 LKEMFSEYGNVTSCKVMM 361
Score = 69.3 bits (162), Expect = 3e-12
Identities = 30/43 (69%), Positives = 38/43 (88%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFV +S+PEEA A+ EMNG+++G KPLYVALAQRKE+R+AHL
Sbjct: 371 GFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHL 413
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/43 (53%), Positives = 27/43 (62%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFV F SPE A AV +MNG +G LYV AQ+K DR+ L
Sbjct: 268 GFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEEL 310
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +1
Query: 118 TRYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
TR G N+++KNLD +ID++ L + F+ FGTI S KV ++
Sbjct: 126 TRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD 166
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +1
Query: 85 RKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 231
R+ ++ +SE N+YVKNL I D+ L+K F +G I+SA VM
Sbjct: 209 RRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVM 257
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS 108
+NGK ++ KPLYV AQ+K ERQ L+ F Q++S
Sbjct: 388 MNGK-MIGRKPLYVALAQRKEERQAHLQSLFTQIRS 422
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 373
GFV F E A A+ ++NG ++ K ++V R++DR
Sbjct: 175 GFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 213
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 88.6 bits (210), Expect = 4e-18
Identities = 42/77 (54%), Positives = 58/77 (75%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 180
LNG + + K YVGRAQKK+ER+ EL+ ++EQ E ++Q NLYVKNLD +I DE+
Sbjct: 89 LNGHKF-DDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEK 147
Query: 181 LRKEFAPFGTITSAKVM 231
L++ F+PFGT+TS+KVM
Sbjct: 148 LKEIFSPFGTVTSSKVM 164
Score = 63.3 bits (147), Expect = 2e-10
Identities = 25/43 (58%), Positives = 39/43 (90%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFV F++PEEAT+A+++++G+++ +KPLYVA+AQRKEDR+ L
Sbjct: 175 GFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRL 217
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/58 (36%), Positives = 37/58 (63%)
Frame = +1
Query: 85 RKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRIKAR 258
R+ E+ + T++ N+YVKNL ++ D+ L+ F +G ITSA V+++DG K++
Sbjct: 15 RRQERDSTANKTKF--TNVYVKNLAESTTDDDLKNAFGEYGKITSA-VVMKDGEGKSK 69
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFV F + ++A +AV +NG K YV AQ+K +R+ L
Sbjct: 72 GFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 114
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 105
L+GK ++E KPLYV AQ+K +R+ L+ +F Q++
Sbjct: 192 LSGK-MIESKPLYVAIAQRKEDRRVRLQAQFSQVR 225
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 80.2 bits (189), Expect = 1e-15
Identities = 43/88 (48%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSER-LTRYQGVNLYVKNLDDTIDDE 177
+NG +V+ K L+VGRAQ+K R ++LK KFE K R + +G+NLYVKNLDD++D+
Sbjct: 179 MNGV-VVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNT 237
Query: 178 RLRKEFAPFGTITSAKVMLEDGRIKARV 261
+L + F+ FGTITS KVM+ I V
Sbjct: 238 KLEELFSEFGTITSCKVMVHSNGISKGV 265
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = +2
Query: 254 LGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
+GFV FS+ EEA+KA+ +MNG++VG KP+YV+LAQ KE K HL
Sbjct: 265 VGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHL 308
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/45 (46%), Positives = 26/45 (57%)
Frame = +2
Query: 251 RLGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
R GFV F E A A+ +MNG +V K L+V AQRK +R L
Sbjct: 160 RFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDL 204
Score = 41.1 bits (92), Expect = 8e-04
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = +1
Query: 136 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRIKAR 258
N+YVKNL +T D L++ F FG ITSA V+++DG K+R
Sbjct: 120 NVYVKNLVETATDADLKRLFGEFGEITSA-VVMKDGEGKSR 159
Score = 36.7 bits (81), Expect = 0.017
Identities = 15/31 (48%), Positives = 24/31 (77%)
Frame = +1
Query: 136 NLYVKNLDDTIDDERLRKEFAPFGTITSAKV 228
N++VKNLD++ID+++L F+ FG + S KV
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKV 62
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 69.3 bits (162), Expect = 3e-12
Identities = 33/71 (46%), Positives = 50/71 (70%)
Frame = +1
Query: 28 KPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFG 207
K LYVGRAQKKAER++ L+ +F++ E+ + N+YVKN++ + +E LRK F+ G
Sbjct: 269 KCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCG 328
Query: 208 TITSAKVMLED 240
TITS K+M ++
Sbjct: 329 TITSTKLMCDE 339
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/43 (62%), Positives = 33/43 (76%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFVCFS+PEEA AV +G++ KPLYVA+AQ+KEDRK L
Sbjct: 347 GFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQL 389
Score = 44.4 bits (100), Expect = 8e-05
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +1
Query: 16 LVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEF 195
+V K +YVG+ KK +R K E+ T NLY+KNLD + ++ LR++F
Sbjct: 176 IVADKEIYVGKFMKKTDRVKP---------EEKYT-----NLYMKNLDADVSEDLLREKF 221
Query: 196 APFGTITSAKVMLEDGRI 249
A FG I S + ++ R+
Sbjct: 222 AEFGKIVSLAIAKDENRL 239
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +2
Query: 260 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 376
FV F +PE+A +A +NG G+K LYV AQ+K +R+
Sbjct: 245 FVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAERE 283
Score = 35.5 bits (78), Expect = 0.039
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +1
Query: 121 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKV-MLEDGR 246
R GV N++VKNL +++ + L+ F FG I S KV LEDG+
Sbjct: 107 RRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGK 150
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 373
GFV F + A A+ +N IV K +YV +K DR
Sbjct: 155 GFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR 193
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +1
Query: 13 ELVEGKPLYVGRAQKKAERQKELKRKF 93
++ GKPLYV AQKK +R+ +L+ +F
Sbjct: 367 QMFHGKPLYVAIAQKKEDRKMQLQVQF 393
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 60.9 bits (141), Expect = 9e-10
Identities = 36/77 (46%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Frame = +1
Query: 28 KPLYVGRAQKKAERQKELKRKF-EQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPF 204
K L+VG+A KK ER++ LK+KF + ++ R+ NLYVKNL +++++ RLR+ F +
Sbjct: 270 KKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWS--NLYVKNLSESMNETRLREIFGCY 327
Query: 205 GTITSAKVML-EDGRIK 252
G I SAKVM E+GR K
Sbjct: 328 GQIVSAKVMCHENGRSK 344
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/51 (49%), Positives = 31/51 (60%)
Frame = +1
Query: 100 LKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRIK 252
L R TR NLYVKNLD +I L + F PFG+I S KV+ E+G+ K
Sbjct: 101 LAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSK 151
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 373
GFVCFS+ EE+ +A +NG +V KP+ V +A+RKEDR
Sbjct: 347 GFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDR 385
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
GFV F +PE A KA+ + G +G+K L+V A +K++R+ L
Sbjct: 245 GFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREML 287
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/41 (41%), Positives = 29/41 (70%)
Frame = +1
Query: 136 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRIKAR 258
N+YVKNL +T+ D+ L F+ +GT++S V++ DG ++R
Sbjct: 203 NVYVKNLIETVTDDCLHTLFSQYGTVSSV-VVMRDGMGRSR 242
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFE 96
LNG LV+GKP+ V A++K +R K L++ F+
Sbjct: 364 LNGF-LVDGKPIVVRVAERKEDRIKRLQQYFQ 394
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 36.3 bits (80), Expect = 0.022
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 130 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
G NL++ N+ +D+ L F PFG + SAKV ++
Sbjct: 338 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVD 373
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 36.3 bits (80), Expect = 0.022
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 130 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
G NL++ N+ +D+ L F PFG + SAKV ++
Sbjct: 329 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVD 364
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 127 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 231
Q NLYV NL +D+ L + F FG I S K+M
Sbjct: 185 QTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIM 219
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 35.5 bits (78), Expect = 0.039
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 367
GFV F +P + A+ EMNG+ VG +P+ + + KE
Sbjct: 181 GFVSFLNPADLAAALKEMNGKYVGNRPIKLRKSSWKE 217
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 35.1 bits (77), Expect = 0.051
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 364
GFV F+ E +A+TEMNG+ T+P+ + A K
Sbjct: 199 GFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANK 234
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 35.1 bits (77), Expect = 0.051
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 127 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 231
Q NLYV NL +D+ L + F FG I S K+M
Sbjct: 177 QTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIM 211
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 35.1 bits (77), Expect = 0.051
Identities = 14/41 (34%), Positives = 28/41 (68%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 379
GF+ F S ++A KA+ ++G+IV + ++V +A+ E+ +A
Sbjct: 51 GFITFDSEDDARKALKSLDGKIVDGRLIFVEVAKNAEEVRA 91
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 367
GFV F+S +EA KA+ E NG+ + + ++V A+ K+
Sbjct: 78 GFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQ 114
>At2g15500.1 68415.m01774 hypothetical protein
Length = 132
Score = 34.3 bits (75), Expect = 0.090
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 22 EGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 138
+ K V RAQKK+ER+ ELK +EQ E ++Q N
Sbjct: 39 DDKQWVVDRAQKKSEREMELKVPYEQSLKEIADKFQSYN 77
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 367
GF+ F S ++A KA+ +NG+IV + ++V A+ E
Sbjct: 110 GFITFESEDDAQKALKALNGKIVNGRLIFVETAKEVE 146
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 130 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 240
G NL++ NLD +D++ L F+ FG I S ++ D
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRD 147
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 367
GFV FS E +A+TEMNG T+P+ + A K+
Sbjct: 200 GFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 367
GFV FS E +A+TEMNG T+P+ + A K+
Sbjct: 200 GFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 370
GFV F+ E +A+ EMNG T+P+ ++ A K++
Sbjct: 161 GFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN 198
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 367
GFV F+ E +A+TEMNG+ ++P+ A K+
Sbjct: 218 GFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKK 254
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 127 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
+G NL++ N+ D+ L F FG + SAKV ++
Sbjct: 346 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVD 382
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 127 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
+G NL++ N+ D+ L F FG + SAKV ++
Sbjct: 347 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVD 383
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 352
GFV + S A A+ MNGR +G K L V L
Sbjct: 393 GFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQL 424
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 361
GFV F++ EEA A+T++NG+ + +P+ + + R
Sbjct: 239 GFVSFATREEAENAITKLNGKEIMGRPITLKFSLR 273
>At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical to
gi:3928758 contains Pfam profile PF04055: radical SAM
domain protein
Length = 374
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 151 NLDDTIDDERLRKEFAPFGTITSAKVMLEDGRIKARV 261
N ++D R+ KE+AP GT+T VML G +V
Sbjct: 251 NFKQSLDVLRMAKEYAPAGTLTKTSVMLGCGETPDQV 287
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 364
GFV F E ++A+TEMNG ++ + V +A K
Sbjct: 258 GFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPK 293
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 260 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
FV FS PEE TKA+ +++GR G + + ++ K L
Sbjct: 336 FVQFSRPEETTKALVDLDGRYFGGRTVRATFYDEEKFSKNEL 377
>At1g06760.1 68414.m00718 histone H1, putative similar to histone
H1-1 GB:CAA44312 GI:16314 from [Arabidopsis thaliana];
identical to cDNA H1-1C mRNA for histone H1-1 (partial)
GI:732560
Length = 274
Score = 31.9 bits (69), Expect = 0.48
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 540 SKVECTAPCKPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARP-ITGQQGVAAAAAS 716
SK + T KP T AA + +P PRA A +T R ++ A+P + AA A
Sbjct: 168 SKAKKTIAVKPKTAAAKK-VTAKAKAKPVPRATAAATKRKAVDAKPKAKARPAKAAKTAK 226
Query: 717 IRPP 728
+ P
Sbjct: 227 VTSP 230
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 31.5 bits (68), Expect = 0.63
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 121 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 231
RY LY+ L D+ L+ F+ F +T A+VM
Sbjct: 27 RYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVM 63
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 251 RLGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 379
+ GF+ F S +EA +A+ N +GT + V +A + D A
Sbjct: 10 QFGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHKVGDENA 52
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 364
GFV F E ++A+TEMNG + + V +A K
Sbjct: 247 GFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPK 282
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = +1
Query: 61 AERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
A R L + E R NL+V L E LR FA FG + AKV+ +
Sbjct: 32 ASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTD 90
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 121 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
RY L+V L DD L++ F FG +T A V+ +
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIAD 69
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 364
GFV FS + A A+ EM+G+ + + + V LA +
Sbjct: 79 GFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 121 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
RY L+V L DD L++ F FG +T A V+ +
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIAD 69
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 364
GFV FS + A A+ EM+G+ + + + V LA +
Sbjct: 79 GFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 376
GFV +++ E+A KA EMN + + ++V A+ +E R+
Sbjct: 78 GFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRR 117
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 139 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRIKAR 258
LYV L D +++ L F PFG I K L+ K R
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHR 54
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 103 KSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 228
K+E + + + LYV N+ + D +L F PFGT+ S +V
Sbjct: 98 KAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEV 139
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +1
Query: 46 RAQKKAERQKELKRKFEQLKS--ERLTRYQGVN-LYVKNLDDTIDDERLRKEFAPFGTIT 216
R + + +R E L S +++ Y+ + +YV NL + LR F+ FGTI
Sbjct: 180 RVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIV 239
Query: 217 SAKVM 231
S +V+
Sbjct: 240 STRVL 244
>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
protein contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 1307
Score = 25.8 bits (54), Expect(2) = 1.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 695 SCCCCCIYSSTFSISK 742
SCCCCC S+ S K
Sbjct: 51 SCCCCCSTPSSSSFVK 66
Score = 22.6 bits (46), Expect(2) = 1.7
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +2
Query: 686 TARSCCCCC 712
++RS CCCC
Sbjct: 47 SSRSSCCCC 55
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 130 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR 246
GV L+V L +++ + L K F+P GT+ + + + GR
Sbjct: 9 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGR 47
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 139 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR 246
LYV L+ I ++ + F +G + S +VM EDG+
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAEDGK 262
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 364
G + F+SPEEA KA+ EMNG+++ + + + LA +
Sbjct: 427 GHIEFASPEEAQKAL-EMNGKLLLGRDVRLDLANER 461
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNG 316
GFV F E TKA+TEMNG
Sbjct: 244 GFVRFGDENERTKAMTEMNG 263
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNG 316
GFV F E TKA+TEMNG
Sbjct: 242 GFVRFGDENERTKAMTEMNG 261
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNG 316
GFV F E TKA+TEMNG
Sbjct: 242 GFVRFGDENERTKAMTEMNG 261
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 124 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 231
Y NLY+ L ++D+ L F+ FG I AKV+
Sbjct: 477 YDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVI 512
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 124 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 231
Y NLY+ L ++D+ L F+ FG I AKV+
Sbjct: 477 YDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVI 512
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 136 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRIKARVC 264
++YV+NL I + +EF FGTI V L + VC
Sbjct: 258 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVC 300
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 136 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRIKARVC 264
++YV+NL I + +EF FGTI V L + VC
Sbjct: 317 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVC 359
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/57 (21%), Positives = 31/57 (54%)
Frame = +1
Query: 88 KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRIKAR 258
+F ++K+ + V+NL + ++ L++EF+ FG I K++ ++ +++
Sbjct: 25 RFPKIKASLFNYPLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSK 81
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG-VNLYVKNLDDTIDDE 177
LNG VEG+ + V +K +L L+SE +YV NL T+ E
Sbjct: 137 LNGNT-VEGREIKVNITEKPIASSPDLS----VLQSEDSAFVDSPYKVYVGNLAKTVTKE 191
Query: 178 RLRKEFAPFGTITSAKVMLEDGRIKA 255
L F+ G + SAKV G K+
Sbjct: 192 MLENLFSEKGKVVSAKVSRVPGTSKS 217
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 139 LYVKNLDDTIDDERLRKEFAPFGTITS 219
L+V+N++ +++D L F PFG I S
Sbjct: 187 LFVRNINSSVEDSELSALFEPFGEIRS 213
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 139 LYVKNLDDTIDDERLRKEFAPFGTITS 219
L+V+N++ +++D L F PFG I S
Sbjct: 200 LFVRNINSSVEDSELSALFEPFGEIRS 226
>At2g38250.1 68415.m04697 DNA-binding protein-related contains
similarity to DNA-binding protein GI:170271 from
[Nicotiana tabacum]
Length = 289
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +1
Query: 46 RAQKKAERQKELKRKFEQLKSERL 117
R +++AE+++E +RK E+L+ ERL
Sbjct: 225 REKERAEKEEEWRRKMEELEKERL 248
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 376
GFV + E+A +A+ MN +++G + + + A+ E+RK
Sbjct: 91 GFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAE--ENRK 128
>At4g28690.1 68417.m04099 expressed protein
Length = 448
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = +3
Query: 570 PSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSR 749
P + +QPTY AP +Q + T A P+ Q A PP+ SQ S+
Sbjct: 284 PENSVQNISQGLQPTYY-APLMASQGSQPTRF-APPVASQGSQPTCCA---PPVASQGSQ 338
Query: 750 PANY 761
P Y
Sbjct: 339 PTRY 342
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 513 SNDSNKTYNSKVECTAPCKPSTQAASAYANMQPTYRPAPRAPA 641
+ND KT+N + EC + S A+ + ++ APR P+
Sbjct: 146 ANDKEKTWNDQRECIRTGNMLPRPVSKPASAKLQFKRAPRRPS 188
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPL 340
GFV F + ++A A+ EMNG+ V ++ +
Sbjct: 196 GFVSFRNQQDAQTAINEMNGKWVSSRQI 223
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPL 340
GFV F + ++A A+ EMNG+ V ++ +
Sbjct: 192 GFVSFRNQQDAQTAINEMNGKWVSSRQI 219
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 358
GFV F+S EA KA+ +MNG + ++ +++ + +
Sbjct: 532 GFVEFASVNEAQKALQKMNGENLRSREIFLDVVE 565
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 364
GFV F+S EA +A+ + NG + +++ +A +K
Sbjct: 170 GFVEFASVNEAEEALQKKNGECLDNNKIFLDVANKK 205
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 373
GFV SS +E KA+ +NG + + + V+ A+ + R
Sbjct: 293 GFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 331
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 373
GFV SS +E KA+ +NG + + + V+ A+ + R
Sbjct: 301 GFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 339
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 260 FVCFSSPEEATKAVTEMNGRIV 325
+V FSS EEA KA+ E+N ++V
Sbjct: 66 YVTFSSKEEAEKALLELNAQLV 87
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 260 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 358
FV F +A KA+ MNG+++ KP+ + ++
Sbjct: 223 FVEFFDVRDAAKALRVMNGKVISGKPMVIQFSR 255
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 127 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR 246
+G ++YV++L + + L EF FG IT+ + + + R
Sbjct: 317 EGTSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQR 356
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 1060
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 10 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 138
K+ ++ Y QK+ + K+K E + ER+T+ QG N
Sbjct: 508 KQQLDDSERYKLEYQKRYDESNNDKKKLEDIYRERITKLQGEN 550
>At3g25240.1 68416.m03153 hypothetical protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 281
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -1
Query: 564 RGLCIPPWSCRSYLSH-LSCP**RGAGGSDGTK 469
RGL +PPW SYL H P R G S G K
Sbjct: 222 RGLSLPPWRRSSYLQHKWFGPYKRKVGSSLGVK 254
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 139 LYVKNLDDTIDDERLRKEFAPFGTITSAKV 228
+YV NLD + + L EF FG I S V
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWV 33
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 367
GFVC+SS E A+ ++G + + + V LAQ K+
Sbjct: 221 GFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRI 322
G+V F+S E+A AV MNG++
Sbjct: 102 GYVWFNSKEDAQSAVEAMNGKV 123
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 358
G+V F+S E+A AV MNG+ + + V Q
Sbjct: 121 GYVWFNSKEDAQSAVEAMNGKFFDGRFILVKFGQ 154
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 139 LYVKNLDDTIDDERLRKEFAPFGTITSAKV 228
+YV NLD + + L EF FG + S V
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWV 33
>At4g27370.1 68417.m03929 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif
Length = 1126
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 10 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVK 150
K LVE K + ++ AE + LK +FE+ K + TR + V+
Sbjct: 1063 KSLVEVKSDSISNRKQHAEELRRLKSRFEKWKKDYKTRLRETKARVR 1109
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 376
GFV ++ A KAV + V +PL V LA+ + +RK
Sbjct: 334 GFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERK 373
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 367
GF+ F S E A+ MNG V + L + LA +E
Sbjct: 263 GFISFESAENVQSALATMNGVEVEGRALRLNLASERE 299
>At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative
(CHX28) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 732
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +3
Query: 369 TVKRT*HLSTCREWLVCACSKWAKYSSLVVQVDFL-YHRSLQHHVTMDSSNDSNKTYNSK 545
TV+R LST ++ A L+V + L +H+ L T+D+ + + N K
Sbjct: 469 TVRRMLALST---FVTMAHDVCGLADELMVSIIILPFHKRLNPDGTLDAGHAGFRHVNRK 525
Query: 546 VECTAPCKPSTQAASAYANMQPTYRP 623
+ APC ++ + +RP
Sbjct: 526 ILKNAPCSVGILVDRSFGQTEEAWRP 551
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 16 LVEGKPLYVGRAQKKAERQKELKRKFEQLKSER 114
L E P Y R + ER+K +K K +Q ++ER
Sbjct: 554 LDEKYPAYKDRHKLAVEREKHIKHKADQARAER 586
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPL 340
GFV F + ++A A+ EMNG+ + ++ +
Sbjct: 188 GFVSFRNQQDAQTAINEMNGKWLSSRQI 215
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 139 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM 231
L+V L+ +DE L F+ FGT+ SA V+
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVI 275
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,466,888
Number of Sequences: 28952
Number of extensions: 310397
Number of successful extensions: 1328
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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