Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120051.Seq
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...   127   7e-30
At2g32870.1 68415.m04030 meprin and TRAF homology domain-contain...    28   6.0  

>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score =  127 bits (307), Expect = 7e-30
 Identities = 58/95 (61%), Positives = 71/95 (74%)
 Frame = +3

Query: 459 IIFNYFIRILFYYFTSIEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYIRH 638
           ++    + ++F  F  +EY +A FTI+D IYGSTFF+ATGFHG HVIIGTLFL+IC IR 
Sbjct: 166 LVATVLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQ 225

Query: 639 LNNHFSKNHHFGFEAAA*Y*HFVDVV*LFLYISIY 743
              H +K HH GFEAAA Y HFVDVV LFL++SIY
Sbjct: 226 YLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIY 260



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 30/69 (43%), Positives = 40/69 (57%)
 Frame = +1

Query: 289 LSPNIEIGRI*PPSRITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLFL 468
           L+P +EIG I PP  I   +P++IP LNT IL  SG  VT AHH+++     +    L  
Sbjct: 109 LAPAVEIGGIWPPKGIEVLDPWEIPFLNTPILPSSGAAVTWAHHAILAGKEKRAVYALVA 168

Query: 469 TILLGFYFT 495
           T+LL   FT
Sbjct: 169 TVLLALVFT 177


>At2g32870.1 68415.m04030 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 416

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 417 SLIDRK*LLTNKTKIIFNYFIRILFYYFTSIEYIEASFTI 536
           +L D +   +++T I+FN    + FY+F  + YI  S  I
Sbjct: 16  NLSDDRHKKSDRTLIVFNRKTPLYFYFFEQVRYITGSIYI 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,013,898
Number of Sequences: 28952
Number of extensions: 161192
Number of successful extensions: 255
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)