Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120050.Seq
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    29   0.78 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    28   1.4  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   2.4  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   2.4  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    27   3.1  
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    27   4.1  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    26   7.2  

>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 398 HTYITADISDAQYFKCLNNNESQLMTCINRIRNSDN 505
           H Y+   +S +Q    +++ E +L  C+NR  + DN
Sbjct: 445 HNYLNEKLSPSQAMVIISHYEDELPACVNRRAHIDN 480


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 299 GRHVVRECPANKIFDRNLMSCVEA---HPCTFNGAGHTYITADISDAQ 433
           G +V+     N ++ R  M+   A   H C +NG+  +Y T D+S AQ
Sbjct: 501 GMYVLDNSANNYLYGRQAMNSARAWYIHGC-YNGSATSYPTVDLSPAQ 547


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
 Frame = +1

Query: 574  HADDDISYNSGQL----VCDNFEIISNIECD--QSNVFENKLFMDKFRLNMQFPTEVFDG 735
            +   D+S +S  L      D FEI  +++ D  +SNVF   L +   RLN+ F T     
Sbjct: 2567 YPSSDVSKDSASLSKNAFADKFEI-PDLDADVYRSNVFFETLHLQPTRLNISFETSYESD 2625

Query: 736  TACVPATADMLTF 774
               V ++   L F
Sbjct: 2626 QPAVKSSNPTLDF 2638


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +1

Query: 556  GQQVFKHADDDISYNSG-QLVCDNFEIISNIECDQSNVFENKLFMDKFRLNMQFPTEVFD 732
            G   F+HAD D++Y S  +       +IS +    +NV   +   DKF L      + F 
Sbjct: 1833 GLTKFEHADSDMAYTSDCRSWARKANLISLVYYAWNNVQYRRTIADKF-LQGDVRDQAFY 1891

Query: 733  GTACVPATAD 762
            G  C   T +
Sbjct: 1892 GFVCCSTTTN 1901


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -2

Query: 224 FTQFVNFTLAGFCVKRVIVWTFFDCVRSVCKTPKI 120
           F     F  A FC K V+VWT   CV S    P I
Sbjct: 120 FQNSQQFRDANFC-KLVLVWTVCQCVSSTVYYPAI 153


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 511 ECSGDSRCIDLPNGTGQQVFKHADDDISYNSGQLVCDNFEI 633
           EC G S  +   +    Q  K A   I YNSGQ+   N  I
Sbjct: 263 ECGGKSPFLVFEDADLDQAVKWAALGIMYNSGQICTSNSRI 303


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 27  PMDERLLDTLVLNQHLDKDYSSNEHLYHPTFYLRCFANGAHAVEECPDNY 176
           P  ERL   L+ N    K  ++ E+ +          N A ++ ECP NY
Sbjct: 158 PAPERLTFQLLSNTSEKKTATAEENAFKVGLIEAAAQNLARSLMECPANY 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,464,575
Number of Sequences: 5004
Number of extensions: 75347
Number of successful extensions: 218
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)