Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120050.Seq
(807 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46748| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_46890| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_3943| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_31737| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_3225| Best HMM Match : PKD (HMM E-Value=8.5e-09) 29 5.9
SB_44079| Best HMM Match : Keratin_B2 (HMM E-Value=0.3) 28 7.7
SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10) 28 7.7
>SB_46748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = +3
Query: 33 DERLLDTLVLNQHLDKDYSSNEHLYHPTFYLRCFANGAHAVEECPDNYTFDAKTRQCKVN 212
D+ +L + + L D+SS E LY L+ AN + + D T Q ++
Sbjct: 57 DDTILH-IATGEALVSDWSSKEELY-----LKLAANYKEGMRDMRDRAA--GNTLQMSIH 108
Query: 213 ELCENRPDGYILSYFP 260
+L RP GYI+ + P
Sbjct: 109 QLKPGRPGGYIIPFNP 124
>SB_46890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +3
Query: 99 HLYHPTFYLRCFANGAHAVEECPDNYTFDAKTRQCKVNELCENRPDGYILSYFPLI 266
HL HP ++ G++ + P + F+ ++ CK E CE P+G + P++
Sbjct: 81 HLSHPEDMVKDVPGGSYMLY--PLHPLFNCSSKLCKKKERCEVDPNGSTIKCIPVL 134
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +2
Query: 368 AHPCTFNGAGHTYITADISDAQYFKCLNNNESQLMTCINRIRNSDNQTSVPVTLD 532
AHPCT HT T D + +C+ +E L+ + RI N+ V VTL+
Sbjct: 508 AHPCTRTVKNHTVTT---KDGKKIQCVVPDEKTLLNKLERI-GGYNRHYVAVTLE 558
>SB_3943| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1457
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 281 FMQCVSGRHVVRECPANKIFDRNLMSCVEAHPCT 382
+M+C R+V +C AN++ RN + C+ CT
Sbjct: 6 YMECAYARYVGGKCGANRVNPRN-VQCISIVECT 38
>SB_31737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 153 VEECPDNYTFDAKTRQCKVNELCENRPDGY 242
++EC D T D CK NE+CEN G+
Sbjct: 178 IDECADKSTHD-----CKKNEICENFAGGF 202
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 126 RCFANGAHAVEECPDNYTFDAKTRQC-KVNELCENRPDGY 242
RC +CP YTFD +R+C +NE CE R +G+
Sbjct: 2119 RCINRLGSYTCDCPRGYTFDNSSRRCIDINE-CE-RNNGW 2156
>SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1634
Score = 28.7 bits (61), Expect = 5.9
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -3
Query: 436 ILRVADIGRYVRVSGAVKRARMRFYARH*VAIEYFIRGA--FTHHVAPAYTLH-KLVDEQ 266
I+RV GR +RV G V A + + RH + + RGA T HV L +
Sbjct: 1219 IIRVG--GRIIRVGGRVDAALVSYDTRHPILLPSDHRGALLITRHVHKHGHLGVAATTAK 1276
Query: 265 IRGKY 251
IRGKY
Sbjct: 1277 IRGKY 1281
>SB_3225| Best HMM Match : PKD (HMM E-Value=8.5e-09)
Length = 1080
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = -1
Query: 258 GSMIVYSRL----ACFHTIR*LYTGGFLRQTCNCLD 163
G MIVY+R CF+ Y G +R TCNC D
Sbjct: 461 GEMIVYTRRKASDCCFNGRD--YNGSIIRGTCNCTD 494
>SB_44079| Best HMM Match : Keratin_B2 (HMM E-Value=0.3)
Length = 285
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 508 DECSGDSRCIDLPNGTGQQVFKHADDDISYNSGQLVC 618
D C G C+D+ TG V K D+ +G VC
Sbjct: 136 DVCKGTRTCMDVCKATGVDVCKGTHVDVCKATGMDVC 172
>SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)
Length = 1164
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -3
Query: 418 IGRYVRVSGAVKRARMRFYARH*VAIEYFIRGAFTHHVAP-AYTLHKLVDEQIRGKY 251
+G VR+S VKR + Y + E F G HV P AYTL +L + + G++
Sbjct: 201 VGEQVRLSN-VKRTFTKGYLPNWTE-EVFTVGQVLDHVTPTAYTLRELHGDALEGRF 255
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,783,744
Number of Sequences: 59808
Number of extensions: 601071
Number of successful extensions: 1663
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1655
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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