Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120048.Seq
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833...    30   2.4  
10_07_0177 - 13841148-13841267,13841569-13841645,13842710-138428...    28   9.5  
09_04_0237 - 15936630-15937250,15937457-15937534,15938874-159389...    28   9.5  
06_01_1173 + 10014391-10014678,10015478-10017245,10017333-100174...    28   9.5  

>06_03_1318 -
           29282562-29282566,29282727-29282810,29282913-29283380,
           29283735-29283917,29284362-29284467,29284627-29284651,
           29284736-29284855,29284920-29284997,29285646-29285774,
           29285976-29285989,29286168-29287944,29288344-29288489,
           29288921-29291029
          Length = 1747

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 558 LMERLFCCFLELRQNLCETYSINNKISLHTQKLCYHN 668
           L E L CCFL++R+   E   +N     +  K CY N
Sbjct: 874 LTEELICCFLDMRRQYLE---LNGLSYCYAMKGCYQN 907


>10_07_0177 -
           13841148-13841267,13841569-13841645,13842710-13842860,
           13842942-13843056,13843145-13843236,13843317-13843370,
           13843849-13843935,13844023-13844109,13844191-13844274,
           13844359-13844445,13844793-13845549,13846491-13846648
          Length = 622

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +1

Query: 301 TLNRLVLYLVEVLAHVAASQECTFVMFALFQYQHLKEKYLT---VNYQ*KWILSNTKER 468
           T  RL+    +VL+H+    + +F  F++  Y  L + Y T    +Y   W LS T  R
Sbjct: 228 TPRRLIQVNGDVLSHLDLDSQTSFGTFSVLSYNILADAYATSDAYSYCPTWALSWTYRR 286


>09_04_0237 -
           15936630-15937250,15937457-15937534,15938874-15938973,
           15940414-15942278
          Length = 887

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 354 KSRMYFCYVCFIPVPA-LEGKIP-YCKLPIKVDIIKHKGEINGKSTAAHAAVLA 509
           + RM FCY+C + + A LEGK    C   + V +IK     + + TA++  + A
Sbjct: 622 RCRMVFCYLCGLQIGAVLEGKEKCQCLDNLGVVLIKALCRFSKRRTASYPPIKA 675


>06_01_1173 +
           10014391-10014678,10015478-10017245,10017333-10017436,
           10017632-10017706,10017887-10017918,10019396-10019482,
           10020848-10021294,10021477-10021630,10022203-10022329,
           10022547-10022632,10022719-10022790,10023083-10023286,
           10023732-10024049
          Length = 1253

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 366 YFCYVCFIPVPALEGKIPYCK 428
           +FC+VC +    +E + P+CK
Sbjct: 48  HFCFVCIMAWARVESRCPFCK 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,760,939
Number of Sequences: 37544
Number of extensions: 340123
Number of successful extensions: 743
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)