Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120047.Seq
(809 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12) 33 0.36
SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08) 31 1.1
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30) 31 1.5
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09) 29 4.5
SB_37232| Best HMM Match : EGF (HMM E-Value=1) 29 4.5
SB_13976| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42) 28 7.8
SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0) 28 7.8
>SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)
Length = 156
Score = 32.7 bits (71), Expect = 0.36
Identities = 23/65 (35%), Positives = 31/65 (47%)
Frame = +3
Query: 243 GNH*TDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNT 422
GNH R P+ CN + C + R S V +CGHSC C+ C + VN
Sbjct: 11 GNH---RLTPIG--CNFGGQE-ICDQYRTSKMKLVPVVMPNCGHSC-CSTCAKRVN--RK 61
Query: 423 CPKCK 437
CP+C+
Sbjct: 62 CPECR 66
>SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 351 VTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 446
V L+CGH C C C + + + CP C+ I
Sbjct: 548 VVLLNCGHVCSCRTCAQQI---HQCPVCRGDI 576
>SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)
Length = 317
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 297 AVDSACMRCRRSFAVYPAVTYLHCG-HSCLCTDCDETVNVDN 419
A + C C+ F+ + Y G H C+C +C+ET + +N
Sbjct: 225 ATKNKCASCQTEFSRSKDLKYHEKGCHPCVCNECNETFDHEN 266
>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
Length = 514
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 321 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIR 449
C+ + +L CGH C C E + + CP C++ IR
Sbjct: 473 CKICMDAEVGIVFLPCGHLSCCPGCAEGMEL---CPMCRAPIR 512
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 2 VRTLFVETKNYQR--NFDSNLPQ-PPRSTTCTTVALRRKRFEFWLARYLRC 145
VRT+ E NY++ +FD N+P P + +++ F W +L+C
Sbjct: 338 VRTMASEPSNYRKSADFDFNMPDTDPTAADAEWKKIQQNTFTRWCNEHLKC 388
>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 304 TVHACVAEEVSQFTPPLPICIADIRVCAPIATKR*TWTIRV 426
+VH C A V++FT L +C+ + CA + R T +R+
Sbjct: 411 SVHTCAALVVARFTLVLRLCL-PVHTCAALVFARFTLALRL 450
>SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)
Length = 765
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 360 LHCGHSCLCTDCDETVNVDNTCPKCKSGIR 449
L C H+C+C C +++ CP C+ IR
Sbjct: 701 LPCRHACVCGSCFS--RLESKCPLCRQVIR 728
>SB_37232| Best HMM Match : EGF (HMM E-Value=1)
Length = 79
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 366 CGHSCLCTDCDETVNVDNTCPKCKSGIRYKLK 461
C + C + + VN TCP C G+R ++K
Sbjct: 3 CANGGTCNNGADNVNNTCTCPVCLKGVRCEMK 34
>SB_13976| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 763
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 414 DNTCPKCKSGIRYKLKYKTL*HVALRNGDFRVVY 515
D T K IRY + K + H+ +RN D VV+
Sbjct: 582 DMTYEKMSRAIRYYYERKIIKHILVRNADTEVVF 615
>SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)
Length = 464
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/82 (26%), Positives = 29/82 (35%)
Frame = +2
Query: 77 TTCTTVALRRKRFEFWLARYLRCTTRPSIGTAARCSRCGATTDV*LTLRAFATKRWKSLN 256
T C R+RF +L C P A CG TLR+ TK W ++
Sbjct: 121 TICNETKELRRRFNLTCGEFLLCAGVPIF--PAHNLNCGVNVT---TLRSLYTKSWSNVP 175
Query: 257 RQKLAAQHRMQCEGCRQCMHAL 322
Q + A E C + L
Sbjct: 176 EQFIKAYSASFKETIVLCRYGL 197
>SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)
Length = 900
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = +3
Query: 486 LRNGDFRVVYLSPAQILNLNLPLAYQKSVLFASNSAKVNERIRRLARXXXXXXXSYFYHK 665
LR D +V +S ++ +A KS +N K ER + YF K
Sbjct: 490 LRKEDLLLVLMSVLNQALYHITMASDKSCDHLANFEKKTERHDEICEGLRLRGNQYFKDK 549
Query: 666 QFIKINFLTKKIINV 710
QF + + K IN+
Sbjct: 550 QFKQASVFYTKAINL 564
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,911,675
Number of Sequences: 59808
Number of extensions: 478116
Number of successful extensions: 1514
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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