Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120047.Seq
(809 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79110.2 68414.m09225 expressed protein 39 0.003
At1g79110.1 68414.m09224 expressed protein 39 0.003
At3g12920.1 68416.m01610 expressed protein 37 0.018
At5g47050.1 68418.m05798 expressed protein 36 0.032
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa... 36 0.032
At4g19700.1 68417.m02893 expressed protein 36 0.032
At1g60610.2 68414.m06823 expressed protein 36 0.042
At1g60610.1 68414.m06822 expressed protein 36 0.042
At1g59560.1 68414.m06698 expressed protein contains similarity t... 35 0.056
At5g45100.2 68418.m05534 expressed protein 35 0.073
At5g45100.1 68418.m05533 expressed protein 35 0.073
At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger) fa... 35 0.073
At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger) fa... 35 0.073
At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger) fa... 35 0.073
At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa... 34 0.13
At4g27880.1 68417.m04002 seven in absentia (SINA) family protein... 33 0.17
At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger) fa... 33 0.17
At4g31450.1 68417.m04469 zinc finger (C3HC4-type RING finger) fa... 33 0.22
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa... 33 0.22
At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger) fa... 33 0.30
At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger) fa... 32 0.39
At1g45976.1 68414.m05206 expressed protein 32 0.39
At5g04460.1 68418.m00443 expressed protein 32 0.52
At1g10650.1 68414.m01207 expressed protein 32 0.52
At4g17680.1 68417.m02641 expressed protein 31 0.68
At2g39810.1 68415.m04890 expressed protein 31 0.68
At4g35070.1 68417.m04978 expressed protein 31 0.90
At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger) fa... 31 0.90
At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger) fa... 31 1.2
At4g03000.2 68417.m00408 expressed protein contains similarity t... 31 1.2
At4g03000.1 68417.m00407 expressed protein contains similarity t... 31 1.2
At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger) fa... 31 1.2
At1g80400.1 68414.m09412 zinc finger (C3HC4-type RING finger) fa... 31 1.2
At1g19680.1 68414.m02453 expressed protein 31 1.2
At4g32600.1 68417.m04642 zinc finger (C3HC4-type RING finger) fa... 30 1.6
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 30 2.1
At3g58040.1 68416.m06470 seven in absentia (SINA) family protein... 30 2.1
At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finger) fa... 30 2.1
At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin... 29 2.8
At2g41980.1 68415.m05193 seven in absentia (SINA) family protein... 29 2.8
At2g21380.1 68415.m02544 kinesin motor protein-related 29 2.8
At1g73760.1 68414.m08540 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At1g49220.1 68414.m05518 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At1g30860.1 68414.m03774 expressed protein 29 2.8
At3g61180.1 68416.m06847 zinc finger (C3HC4-type RING finger) fa... 29 3.7
At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger) fa... 29 3.7
At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger) fa... 29 3.7
At1g17145.1 68414.m02090 expressed protein 29 3.7
At1g14910.1 68414.m01782 epsin N-terminal homology (ENTH) domain... 29 3.7
At5g64970.1 68418.m08172 mitochondrial substrate carrier family ... 29 4.8
At5g01450.1 68418.m00058 expressed protein 29 4.8
At3g47990.1 68416.m05232 zinc finger (C3HC4-type RING finger) fa... 29 4.8
At3g18773.1 68416.m02383 zinc finger (C3HC4-type RING finger) fa... 29 4.8
At3g17500.1 68416.m02235 F-box family protein contains Pfam prof... 29 4.8
At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger) fa... 29 4.8
At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom... 29 4.8
At5g44690.1 68418.m05476 hypothetical protein 28 6.4
At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger) fa... 28 6.4
At1g73950.1 68414.m08564 zinc finger (C3HC4-type RING finger) fa... 28 6.4
At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger) fa... 28 6.4
At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger) fa... 28 6.4
At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger) fa... 28 6.4
At1g78420.1 68414.m09138 expressed protein 28 8.4
At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, putati... 28 8.4
>At1g79110.2 68414.m09225 expressed protein
Length = 355
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/74 (33%), Positives = 28/74 (37%)
Frame = +3
Query: 219 CGHSQQNAGNH*TDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCD 398
CG S G R + L E KA CR V L C H CLC C
Sbjct: 273 CGSSCGGGGEETVRRRVGLEREAQDKAERRRRRMCRNCGEEESCVLLLPCRHLCLCGVCG 332
Query: 399 ETVNVDNTCPKCKS 440
+V +TCP C S
Sbjct: 333 SSV---HTCPICTS 343
>At1g79110.1 68414.m09224 expressed protein
Length = 358
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/74 (33%), Positives = 28/74 (37%)
Frame = +3
Query: 219 CGHSQQNAGNH*TDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCD 398
CG S G R + L E KA CR V L C H CLC C
Sbjct: 276 CGSSCGGGGEETVRRRVGLEREAQDKAERRRRRMCRNCGEEESCVLLLPCRHLCLCGVCG 335
Query: 399 ETVNVDNTCPKCKS 440
+V +TCP C S
Sbjct: 336 SSV---HTCPICTS 346
>At3g12920.1 68416.m01610 expressed protein
Length = 335
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +3
Query: 306 SACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 440
S C C + A +V L C H CLC+ C ++ NTCP CKS
Sbjct: 285 SMCRSCGKGEA---SVLLLPCRHMCLCSVCGSSL---NTCPICKS 323
>At5g47050.1 68418.m05798 expressed protein
Length = 300
Score = 35.9 bits (79), Expect = 0.032
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +3
Query: 291 VKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 440
V+ + C CRR A V L C H +CT+CD +V + CP C S
Sbjct: 246 VEMIGPGCRICRRRSAT---VLALPCRHLVMCTECDGSVRI---CPLCLS 289
>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 378
Score = 35.9 bits (79), Expect = 0.032
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 366 CGHSCLCTDCDETVNVD-NTCPKCKSGIRYKLKYK 467
C H CLC+DC E + N CP C+ I +K K
Sbjct: 336 CRHLCLCSDCAEELRFQTNKCPICRQPIHELVKIK 370
>At4g19700.1 68417.m02893 expressed protein
Length = 304
Score = 35.9 bits (79), Expect = 0.032
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = +3
Query: 291 VKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKC 434
V AV C RC A +V L C H CLCT C + + TCP C
Sbjct: 247 VTAVGGGCKRCGEREA---SVLVLPCRHLCLCTVCGGSALL-RTCPVC 290
>At1g60610.2 68414.m06823 expressed protein
Length = 340
Score = 35.5 bits (78), Expect = 0.042
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +3
Query: 288 NVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 440
N+ + S MRC+ +V + C H LC DCD V CP C+S
Sbjct: 282 NIPGMPSTGMRCKLCNVKNVSVLLVPCRHLSLCKDCDVFTGV---CPVCQS 329
>At1g60610.1 68414.m06822 expressed protein
Length = 340
Score = 35.5 bits (78), Expect = 0.042
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +3
Query: 288 NVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 440
N+ + S MRC+ +V + C H LC DCD V CP C+S
Sbjct: 282 NIPGMPSTGMRCKLCNVKNVSVLLVPCRHLSLCKDCDVFTGV---CPVCQS 329
>At1g59560.1 68414.m06698 expressed protein contains similarity to
apoptosis inhibitors
Length = 338
Score = 35.1 bits (77), Expect = 0.056
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 357 YLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKLK 461
++ CGH C CT C + TCP C+ I+ LK
Sbjct: 303 FVECGHMCCCTPCSLQL---RTCPLCRERIQQVLK 334
>At5g45100.2 68418.m05534 expressed protein
Length = 267
Score = 34.7 bits (76), Expect = 0.073
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +3
Query: 300 VDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKC 434
V+ C RC A +V L C H CLCT C + + TCP C
Sbjct: 213 VNGGCKRCGELTA---SVLVLPCRHLCLCTVCGSSALL-RTCPVC 253
>At5g45100.1 68418.m05533 expressed protein
Length = 294
Score = 34.7 bits (76), Expect = 0.073
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +3
Query: 300 VDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKC 434
V+ C RC A +V L C H CLCT C + + TCP C
Sbjct: 240 VNGGCKRCGELTA---SVLVLPCRHLCLCTVCGSSALL-RTCPVC 280
>At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 359
Score = 34.7 bits (76), Expect = 0.073
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 360 LHCGHSCLCTDCDETVNV-DNTCPKCKSGIRYKLKYK 467
L C H C+C+DC + + + N CP C+ I L+ K
Sbjct: 315 LPCRHLCMCSDCAKELRLQSNKCPICRQPIEELLEIK 351
>At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q06003 Goliath
protein (G1 protein) {Drosophila melanogaster}; contains
Pfam profile PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 381
Score = 34.7 bits (76), Expect = 0.073
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 303 DSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKLKYK 467
D+ C C ++ + L CGH C D+ + ++ TCP CK I Y+
Sbjct: 322 DAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNILKSSNYE 376
>At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q9NVW2 RING finger
protein 12 (LIM domain interacting RING finger protein)
{Homo sapiens}; contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 368
Score = 34.7 bits (76), Expect = 0.073
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 303 DSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 446
D+ C C ++ + L CGH C+ D+ + ++ TCP CK I
Sbjct: 310 DAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNI 357
>At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 343
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = +3
Query: 297 AVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKLKYKTL* 476
AV C+ C Y AV ++ CGH C CT C + +CP C+ R L KT
Sbjct: 291 AVPDLCVICLEQ--EYNAV-FVPCGHMCCCTACSSHL---TSCPLCRR--RIDLAVKTYR 342
Query: 477 H 479
H
Sbjct: 343 H 343
>At4g27880.1 68417.m04002 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 327
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 330 SFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 437
++++YP + H GH+ LC+ C V V N CP C+
Sbjct: 68 TYSMYPPIHQCHNGHT-LCSTC--KVRVHNRCPTCR 100
>At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHG1a
GI:3822225 from [Arabidopsis thaliana]; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 494
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 312 CMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 440
C C+ SF + L CGH ++ + V N CP CKS
Sbjct: 442 CTICQESFKNEEKIATLDCGHEYHAECLEKWLIVKNVCPICKS 484
>At4g31450.1 68417.m04469 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 497
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 303 DSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 440
D+ C C+ + + V LHC H+ E + + + CP CK+
Sbjct: 445 DAKCSICQEEYTIGDEVGRLHCEHTYHVKCVQEWLRIKSWCPICKA 490
>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 388
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 354 TYLHCGHSCLCTDCDETVNVD-NTCPKCKSGIRYKLKYK 467
T L C H C+C+ C + + N CP C+ + L+ K
Sbjct: 330 TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 368
>At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q9WTV7 RING finger
protein 12 (LIM domain interacting RING finger protein)
{Mus musculus}; contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 390
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +3
Query: 282 ECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 446
E ++ D+ C C + + L C H CT D+ +++++ CP CK I
Sbjct: 328 ERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNI 382
>At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger)
family protein contains weak similarity to zinc finger
proteins
Length = 337
Score = 32.3 bits (70), Expect = 0.39
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 354 TYLHCGHSCLCTDCDETVNVD-NTCPKCKSGIRYKLK 461
T L C H C+C+ C + + N CP C+ + L+
Sbjct: 296 TVLPCRHMCMCSGCAKALRFQTNLCPVCRQPVEMLLE 332
>At1g45976.1 68414.m05206 expressed protein
Length = 325
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 315 MRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 440
M CR + L C H CLC +C+ + ++CP C+S
Sbjct: 277 MMCRFCGVREMCMLLLPCNHMCLCKECERKL---SSCPLCQS 315
>At5g04460.1 68418.m00443 expressed protein
Length = 863
Score = 31.9 bits (69), Expect = 0.52
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 366 CGHSCLCTDC-DETVNVDNTCPKCKSGI 446
CGH C C+ C +E V CP C++ I
Sbjct: 826 CGHMCTCSKCANELVRNGGKCPLCRAPI 853
>At1g10650.1 68414.m01207 expressed protein
Length = 339
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 315 MRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 440
MRC+ +V + C H LC +CD + CP CKS
Sbjct: 290 MRCKMCNVKEVSVLIVPCRHLSLCKECDVFTKI---CPVCKS 328
>At4g17680.1 68417.m02641 expressed protein
Length = 314
Score = 31.5 bits (68), Expect = 0.68
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +3
Query: 291 VKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKC 434
++ + +C CRR A A L C H LC CD V CP C
Sbjct: 260 IELIGPSCRICRRKSATVMA---LPCQHLILCNGCD--VGAVRVCPIC 302
>At2g39810.1 68415.m04890 expressed protein
Length = 865
Score = 31.5 bits (68), Expect = 0.68
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 264 NLPLNTECNVKAVDSACMRCRRSFAVYPAVTYL--HCGHSCLCTDCDETVNVDNTCPKCK 437
++ L CN V+ C R + V Y+ CGH+ LCT+C + +V CP C+
Sbjct: 38 SINLRELCNEAKVER-CRATRDLASCGRFVNYVLNPCGHASLCTECCQRCDV---CPICR 93
Query: 438 S 440
S
Sbjct: 94 S 94
>At4g35070.1 68417.m04978 expressed protein
Length = 265
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 300 VDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 440
+ S C C + V +L C H C C DC+E + + CP C +
Sbjct: 213 MSSCCCNCGSNGVT--RVLFLPCRHLCCCMDCEEGLLL---CPICNT 254
>At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 368
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 300 VDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 437
VD C C+ + V L+CGHS + ++ N CP CK
Sbjct: 316 VDRKCSICQDEYEREDEVGELNCGHSFHVHCVKQWLSRKNACPVCK 361
>At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 691
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Frame = +3
Query: 192 ALQQTCN*LC-GHSQQNAGNH*TDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHC 368
AL++ +C G +++ N R NT+ A C C+ + + L C
Sbjct: 598 ALEERIGDVCTGVNEETISNRLKQRKYKSNTKSPQDA--EPCCVCQEEYTEGEDMGTLEC 655
Query: 369 GHSCLCTDCDETVNVDNTCPKCKS 440
GH E + N CP CK+
Sbjct: 656 GHEFHSQCIKEWLKQKNLCPICKT 679
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 348 AVTYLHCGHSCLCTDCDETVNVD--NTCPKCKSGIRYKLK 461
+V +L C H LC+ C++ + CP C++ I+ +++
Sbjct: 769 SVIFLPCAHQVLCSKCNQLHEKEAMEDCPSCRAKIQRRIQ 808
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 348 AVTYLHCGHSCLCTDCDETVNVD--NTCPKCKSGIRYKLK 461
+V +L C H LC+ C++ + CP C++ I+ +++
Sbjct: 769 SVIFLPCAHQVLCSKCNQLHEKEAMEDCPSCRAKIQRRIQ 808
>At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 299
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 354 TYLHCGHSCLCTDCDETVNVD-NTCPKCKSGI 446
T L C H C+C+ C + + N CP C+ +
Sbjct: 254 TVLPCRHMCMCSGCAKLLRFQTNLCPICRQPV 285
>At1g80400.1 68414.m09412 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q90972 RING finger
protein 13 {Gallus gallus}; contains Pfam profile:
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 407
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 291 VKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDC-DETVNVDNTCPKCKSGI 446
+ D++C C + V L C H DC D+ + ++ TCP CK+ +
Sbjct: 348 ISGEDASCCICLTRYGDDEQVRELPCSH-VFHVDCVDKWLKINATCPLCKNEV 399
>At1g19680.1 68414.m02453 expressed protein
Length = 444
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = +3
Query: 345 PAVTYLHCGH----SCLCTDCDETVNVDNTCPKCKSGIRYKLKYKTL 473
P L CGH +CL T +ET D TCP C KL K L
Sbjct: 292 PIPAVLACGHVYHAACLETMTNETEKYDPTCPICTETQVTKLSRKAL 338
>At4g32600.1 68417.m04642 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING finger protein 38
[Homo sapiens] GI:21666412; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 453
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = +3
Query: 276 NTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYK 455
+ E + D+ C C +A + L C H D+ + ++ +CP CKS + K
Sbjct: 351 DNERAISGEDAVCCICLAKYANNEELRELPCSHFFHKECVDKWLKINASCPLCKSEVGEK 410
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 315 MRCRRSFAVYPAVTYLHCGHSCLCTDCD-ETVNVDNTCPKCK 437
++C ++Y + L C H C C +++ +D TCP CK
Sbjct: 349 LKCPICLSLYNSAVSLSCNH-VFCNACIVKSMKMDATCPVCK 389
>At3g58040.1 68416.m06470 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 308
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 339 VYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 437
+YP + GH+ LC++C + V NTCP C+
Sbjct: 67 MYPPIHQCPNGHT-LCSNCK--LRVQNTCPTCR 96
>At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger) domain
Length = 359
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +3
Query: 267 LPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 446
L L TE + A D+ C C S+ + L C H T + + + TCP CK I
Sbjct: 292 LCLATERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNI 351
>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
motor protein - Ustilago maydis, PID:g2062750; identical
to cDNA MKRP2 mRNA for kinesin-related protein
GI:16902293, kinesin-related protein [Arabidopsis
thaliana] GI:16902294
Length = 1055
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 321 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKL 458
C+ F A L C H CLC C + CP C++ I +L
Sbjct: 1008 CKVCFESPTAAILLPCRHFCLCKSCSLAC---SECPICRTKISDRL 1050
>At2g41980.1 68415.m05193 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 305
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 339 VYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 437
+YP + GH+ LC+ C + V NTCP C+
Sbjct: 64 MYPPIHQCPNGHT-LCSSCK--LRVQNTCPTCR 93
>At2g21380.1 68415.m02544 kinesin motor protein-related
Length = 1058
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 321 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKL 458
C+ F A L C H CLC C + CP C++ I +L
Sbjct: 1011 CKVCFESPTATILLPCRHFCLCKSCSLAC---SECPICRTKISDRL 1053
>At1g73760.1 68414.m08540 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 367
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 303 DSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 440
D C+ C+ + V L CGH ++ + N+CP CK+
Sbjct: 316 DRKCIICQDEYEAKDEVGELRCGHRFHIDCVNQWLVRKNSCPVCKT 361
>At1g49220.1 68414.m05518 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 251
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +3
Query: 282 ECNVKAVDSACMRCRRSFAVYPAVTYL-HCGHSCLCTDCDETVNVDNTCPKCKS 440
E N+ +D C+ C F + L C H D+ + TCPKC++
Sbjct: 125 EMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRN 178
>At1g30860.1 68414.m03774 expressed protein
Length = 730
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 348 AVTYLHCGHSCLCTDCDETVN-VDNTCPKCKSGI 446
AV Y CGH C+C C ++ CP C++ I
Sbjct: 686 AVLY-RCGHMCMCLKCANELHWSGGKCPICRAQI 718
>At3g61180.1 68416.m06847 zinc finger (C3HC4-type RING finger)
family protein low similarity to RNF6 protein [Mus
musculus] GI:20530241; contains Pfam profile PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 379
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/75 (24%), Positives = 31/75 (41%)
Frame = +3
Query: 222 GHSQQNAGNH*TDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDE 401
G ++ G T + TE + + D+ C C ++ + L C H D+
Sbjct: 293 GEIRETQGGIMTGLDTESQTERMLLSEDAECSICLCAYEDGVELRELPCRHHFHSLCVDK 352
Query: 402 TVNVDNTCPKCKSGI 446
+ ++ TCP CK I
Sbjct: 353 WLRINATCPLCKFNI 367
>At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 294 KAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDN-TCPKCKS 440
K D+ C C F + L CGH T ++ ++ N TCP C++
Sbjct: 97 KQADNECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRT 146
>At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 294 KAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDN-TCPKCKS 440
K D+ C C F + L CGH T ++ ++ N TCP C++
Sbjct: 97 KQADNECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRT 146
>At1g17145.1 68414.m02090 expressed protein
Length = 335
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +3
Query: 321 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNT-----CPKCKSGIRYKLKYK 467
C F YP++ C +CT+C + N+ CP CK+ Y ++Y+
Sbjct: 63 CPICFLYYPSLNRSRCCMKSICTECFLRMKSPNSAQPTQCPFCKTS-NYAVEYR 115
>At1g14910.1 68414.m01782 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Chain A, Calm-N N-Terminal Domain Of Clathrin
Assembly Lymphoid Myeloid Leukaemia Protein, Pi(4,5)p2
Complex (GP:13399999) {Homo sapiens}
Length = 692
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 308 CMHALQKKFRSLPRRYLSALRTFVFVHRLRRNG 406
C+HAL ++ R + AL+ + +HRL R+G
Sbjct: 71 CIHALSRRLHKT-RNWTVALKALLVIHRLLRDG 102
>At5g64970.1 68418.m08172 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 428
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 150 VVQRR*RASQNSKRLRLNATVVHVVERGG 64
VV+RR + ++KRL AT V ++E+GG
Sbjct: 361 VVRRRLQMQSHAKRLSAVATCVKIIEQGG 389
>At5g01450.1 68418.m00058 expressed protein
Length = 444
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +3
Query: 357 YLHCGHSCLCTDCDETV-NVDNTCPKCKSGIR 449
+L CGH C C + CP C+ IR
Sbjct: 405 FLSCGHCVACFQCGTRIAETSGFCPVCRKKIR 436
>At3g47990.1 68416.m05232 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 358
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +3
Query: 312 CMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 446
C+ C F + V L C H+ D+ + ++ CP+C+ +
Sbjct: 235 CLICLEEFHIGHEVRGLPCAHNFHVECIDQWLRLNVKCPRCRCSV 279
>At3g18773.1 68416.m02383 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 220
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +3
Query: 282 ECNVKAVDSACMRCRRSFAVYPAVTYL-HCGHSCLCTDCDETVNVDNTCPKCK 437
E N+ V C+ C F + L C H D+ + TCPKC+
Sbjct: 120 EINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCR 172
>At3g17500.1 68416.m02235 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 438
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 363 HCGHSCLCTDCDETVNVDNTCPKCKSGIRYKLKYKT 470
HC LCT D+ + V N C +++ + YKT
Sbjct: 98 HCDGLLLCTTKDDRLEVWNPCTGQTRRVQHSIHYKT 133
>At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 195
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 1/88 (1%)
Frame = +3
Query: 285 CNVKAVDSACMRCRRS-FAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKLK 461
C K ++ C C F V L CGH T E TCP C +
Sbjct: 80 CREKCLEDNCPICHEYIFTSNSPVKALPCGHVMHSTCFQEYTCSHYTCPICSKSLGDMQV 139
Query: 462 YKTL*HVALRNGDFRVVYLSPAQILNLN 545
Y + L YL+ Q++ N
Sbjct: 140 YFRMLDALLAEQKMPDEYLNQTQVILCN 167
>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
domain-containing protein contains Pfam profiles
PF00168: C2 domain; contains PF02893: GRAM domain;
similar to Chain A, Crystal Structure Of Synaptotagmin
Iii C2aC2B Length(GI:6980525); similar to Synaptotagmin
III (SytIII) (Swiss-Prot:P40748) [Rattus norvegicus]
Length = 1859
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 348 AVTYLHCGHSCLCTDCDETVNVDN--TCPKCKSGIRYKLK 461
+V +L C H LC C++ + CP C+ I +++
Sbjct: 777 SVIFLPCAHQVLCFKCNQLHEKEGMMDCPSCRGTIHRRIQ 816
>At5g44690.1 68418.m05476 hypothetical protein
Length = 684
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = +3
Query: 303 DSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDN-TCPKCKSGI 446
DS C F + CGH C C C + N CP C + I
Sbjct: 626 DSLERNCSICFEMPIDSLLYRCGHMCTCLKCAHELQWSNMKCPICMAPI 674
>At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 159
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 366 CGHSCLCTDC-DETVNVDNTCPKCKS 440
C H C TDC DE + TCP C++
Sbjct: 113 CNH-CFHTDCVDEWLRTSATCPLCRN 137
>At1g73950.1 68414.m08564 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 466
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 321 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKL 458
CR F +V L C H LC +C + CP C+ I +L
Sbjct: 419 CRVCFEREISVVLLPCRHRVLCRNCSDKC---KKCPFCRITIEERL 461
>At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 248
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 303 DSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 437
+ C C+ F V L C H + +N+ NTCP C+
Sbjct: 135 EKVCAICKEEFEVGEEGKELKCLHLYHSSCIVSWLNIHNTCPICR 179
>At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 645
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +3
Query: 192 ALQQTCN*LC-GHSQQNAGNH*TDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHC 368
+L++ +C G +++ N + +T + + V+ C+ C+ + + L C
Sbjct: 553 SLEERIGDVCTGLNEETISNRLKQQKYKSSTRSS-QEVEPCCV-CQEEYKEEEEIGRLEC 610
Query: 369 GHSCLCTDCDETVNVDNTCPKCKS 440
GH E + N CP CK+
Sbjct: 611 GHDFHSQCIKEWLKQKNLCPICKT 634
>At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 467
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 321 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKL 458
CR F ++ L C H LC C + TCP C+ I +L
Sbjct: 420 CRVCFEKDISLVLLPCRHRVLCRTCADKC---TTCPICRIDIEKRL 462
>At1g78420.1 68414.m09138 expressed protein
Length = 401
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +3
Query: 321 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNT-----CPKCKSGIRYKLKYK 467
C F YP++ C +CT+C + N+ CP CK+ Y ++Y+
Sbjct: 59 CPICFLYYPSLNRSRCCMKSICTECFLQMKNPNSARPTQCPFCKTP-NYAVEYR 111
>At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, putative
/ PEP carboxylase, putative (PPC1) strong similarity to
SP|P29196 Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
(PEPCASE) {Solanum tuberosum}; contains Pfam profile
PF00311: phosphoenolpyruvate carboxylase
Length = 967
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 141 AVRLDRRSARLQGVHGAALQQTCN*LCGHSQQNAGNH 251
A+ LDR LQ +HG L++T L HS + G H
Sbjct: 35 ALLLDRFLDILQDLHGEDLRETVQELYEHSAEYEGKH 71
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,096,178
Number of Sequences: 28952
Number of extensions: 305743
Number of successful extensions: 1092
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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