Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120046.Seq
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    27   2.2  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.9  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   5.2  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   5.2  
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos...    26   5.2  
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    26   6.9  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   9.1  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    25   9.1  

>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 278 DRHFELIVSSSKMGKTIFDILKRLMRWLLQINHPSS 171
           +R     V+S K+GK   +IL  L+R     NHP S
Sbjct: 520 ERTMSNFVNSGKLGKNYTNILCLLLRLRQACNHPQS 555


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +1

Query: 571  LRFFDVTNARTHRGGVGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRF 720
            L FF+  +    RGG+    F  ++  +QN     +A  + + D  +L +
Sbjct: 3826 LNFFETCSDSNERGGLESLFFKTHASNIQNFCTEVLANTHCEEDCLKLLY 3875


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 305 FFISN*MPSDRHFELIVSSSKMGKTIFDILKRLMRWLLQINHP 177
           F+  N +P D+      S  +  K IFD+  +L   +L + HP
Sbjct: 727 FYFDNSLPEDQSLLFPASLKRSAKNIFDLAYQL-NGILPVFHP 768


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +1

Query: 55  MPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAY 168
           +P+G  P  +R N+C+ +     +     + P  P  Y
Sbjct: 155 VPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGY 192


>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 384 EQLIFHLIYNNEEAVNVICDNLKYTEVSQAARN-ALYTAFTQLKKHSRHHKPEHVLFA 554
           E +++ +   NE     IC  + YTE+S+   N +      +  KH    +  +VLF+
Sbjct: 91  ETVLYKVADPNENNKYPICSIISYTELSKLRENQSSRLREAEKSKHKNKTRTRYVLFS 148


>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 535 GLWCLECFLS 506
           G+WCL CFLS
Sbjct: 156 GIWCLTCFLS 165


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 487 YTQRLRNSRSILDTTNPNTFCSRVSRDEL 573
           Y QR R+S   L+T  P+ FC     DEL
Sbjct: 109 YLQRHRSSDENLNTDLPHIFCLNDPLDEL 137


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 589 TNARTHRG-GVGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRFRNSATCIIDETGLV 762
           T  RT +  G    L +N+  + Q+ I R   P+Y+  D + L  R   T I +ET L+
Sbjct: 174 TKLRTVQSCGTNLSLLDNFY-YYQDHIDRIFDPQYIPSDQDILHCRIKTTGISEETFLL 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,507
Number of Sequences: 5004
Number of extensions: 64329
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)