Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120046.Seq
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51440.1 68416.m05634 strictosidine synthase family protein s...    31   0.64 
At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putativ...    30   1.9  
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ...    30   1.9  
At3g42200.1 68416.m04342 hypothetical protein several hypothetic...    29   3.4  
At5g45220.1 68418.m05550 Toll-Interleukin-Resistance (TIR) domai...    28   5.9  

>At3g51440.1 68416.m05634 strictosidine synthase family protein
           similar to hemomucin [Drosophila
           melanogaster][GI:1280434], strictosidine synthase
           [Rauvolfia serpentina][SP|P15324]; contains
           strictosidine synthase domain PF03088
          Length = 371

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 163 AYHDDGWFI---CNSHLIKRFKMSKMVLPIFDEETINSK*RSLGI*LEIKKEV 312
           AYH+D  FI   C    +KR K+++ V     E+ +N+  R LGI   I  EV
Sbjct: 74  AYHEDSGFIYTGCVDGWVKRVKVAESVNDSLVEDLVNTGGRPLGIAFGIHGEV 126


>At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 361

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 318 RILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVIC 440
           R ++ + T+Y + FNL S   A + + HLI + +E + V+C
Sbjct: 147 RKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEI-VVC 186


>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 494

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 318 RILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVIC 440
           R ++ + T+Y + FNL S   A + + HLI + +E + V+C
Sbjct: 147 RKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEI-VVC 186


>At3g42200.1 68416.m04342 hypothetical protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 134

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 158 PTRIMTTDGLSATATSSNVLKCQKWF-CPFSTKRQSIQNDDR*AFSW 295
           P R    +G+ A  + S++  CQ+++ C F+ K + ++ND+   F W
Sbjct: 24  PKRCWCREGVMALISKSDLNPCQRYYRCGFAAKHR-LRNDEH-TFKW 68


>At5g45220.1 68418.m05550 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 546

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +1

Query: 619 GDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRFRNSATCI--IDETGL 759
           GDQL NN+ G+L + +RR+    +  ID +E R  +  T    I+++G+
Sbjct: 339 GDQLRNNFVGYLVDALRRSEINVF--IDNQEQRGEDLNTLFKRIEDSGI 385


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,621,396
Number of Sequences: 28952
Number of extensions: 331214
Number of successful extensions: 788
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)