Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120044.Seq
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57649| Best HMM Match : RPE65 (HMM E-Value=9)                       30   1.7  
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_27587| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               30   2.3  
SB_23383| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)                 29   3.9  
SB_5894| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  

>SB_57649| Best HMM Match : RPE65 (HMM E-Value=9)
          Length = 309

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 737 RPSNRNASLLHGRNRQGGVTYPCGLTRGPT 648
           RP+  ++SL H  + Q G  Y  G TRGP+
Sbjct: 28  RPTTIHSSLAHPHSAQDGTFYNFGATRGPS 57


>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 734 PSNRNASLLHGRNRQGGVTYPCGLTRGPTTINHGDMWF 621
           P   +A ++   N +GGV    G + GP    HG+ WF
Sbjct: 792 PGKISADMICAGNPEGGVDTCQGDSGGPLVCQHGNQWF 829


>SB_27587| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 879

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 704 GRNRQGGVTYPCGLTRGPTTINHGDMW 624
           G   QG V +  G+ +  TT  HGD W
Sbjct: 346 GNGIQGAVVHVLGIKKNVTTARHGDFW 372


>SB_23383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 704 GRNRQGGVTYPCGLTRGPTTINHGDMW 624
           G   QG V +  G+ +  TT  HGD W
Sbjct: 346 GNGIQGAVVHVLGIKKNVTTARHGDFW 372


>SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)
          Length = 791

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 223 KSRIYKKKNFSTPLPLYFQWWINAVDRNFVRSLVHSKPHE 104
           KS++  K N  T LPL F  WI+ V+ N   + +   P +
Sbjct: 704 KSKLNVKDNQLTSLPLDFGSWISLVELNVATNQISKLPED 743


>SB_5894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 379

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 223 KSRIYKKKNFSTPLPLYFQWWINAVDRNFVRSLVHSKPHE 104
           KS++  K N  T LPL F  WI+ V+ N   + +   P +
Sbjct: 279 KSKLNVKDNQLTSLPLDFGSWISLVELNVATNQISKLPED 318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,987,774
Number of Sequences: 59808
Number of extensions: 346619
Number of successful extensions: 552
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)