Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120044.Seq
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.1  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 59  LSKPLRRLRGYLFSTLMWFTMN*--TTNKISVNSVNPPLKI*R*WSRKIFFFVYPRFI 226
           L+ PL  L  YL  T++  T++   T   ++VN  +P       W R +F  V PRF+
Sbjct: 294 LTVPL--LGKYLLFTMVLVTLSVVVTIAVLNVNFRSPVTHRMARWVRVVFIQVLPRFL 349


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 721 THHCFTAEI--GRVVSPTRADSQEVLPPLIMAICGFVVLL*FTKSKLIC 581
           T H  T ++    V +   AD + V+PP+I+   G V +     + L+C
Sbjct: 211 TMHRLTRQVVVSSVANVRIADHRGVMPPVILENSGVVHVAQDESTSLVC 259


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 721 THHCFTAEI--GRVVSPTRADSQEVLPPLIMAICGFVVLL*FTKSKLIC 581
           T H  T ++    V +   AD + V+PP+I+   G V +     + L+C
Sbjct: 211 TMHRLTRQVVVSSVANVRIADHRGVMPPVILENSGVVHVAQDESTSLVC 259


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 92  LFSTLM-WFTMN*TTNKISVNSVNPPLKI*R*WSRKIFFFVYPRFI 226
           LF+ ++  F++  T   ++V+  +P   +   W R++F  V PR +
Sbjct: 308 LFTMILDTFSICVTVVVLNVHFRSPQTHVMAPWVRRVFIHVLPRLL 353


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 537 FNEQTISRKIPPN 499
           FN QT+  K+PP+
Sbjct: 20  FNNQTVVDKVPPD 32


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 127  LVHSKPHESAE*ITPKSTERLTQPGKP 47
            +VH+ PH     +T  +T  LT   +P
Sbjct: 1362 IVHAPPHSPQITLTATTTNSLTMKVRP 1388


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 185 WSRKIFFFVYPR 220
           W   IF+ VYPR
Sbjct: 25  WKNAIFYQVYPR 36


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 689 GGVTYPCGLTRGPTTINHGDMWFCGFTLIYK 597
           G   +P G   G TT++HG  +  G    Y+
Sbjct: 140 GSCYWPRGKNLGGTTLHHGMAYHRGHRKDYE 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,252
Number of Sequences: 438
Number of extensions: 3718
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)