Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120041.Seq
         (827 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.7  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    23   2.2  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    22   6.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   6.8  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   6.8  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    21   9.0  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   9.0  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 618 DRQHHLDAFGRWSRRKNAIR 559
           +RQ H+  +  WS R NA R
Sbjct: 535 ERQLHMQLYPDWSSRANATR 554


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 618 DRQHHLDAFGRWSRRKNAIR 559
           +RQ H+  +  WS R NA R
Sbjct: 427 ERQLHMQLYPDWSSRANATR 446


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 560 RIAFFRRDQRPNASRWCWRSI 622
           R+A+FR D   N   W W  +
Sbjct: 193 RLAYFREDLGINLHHWHWHLV 213


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 105 IVSFDACITYKSPCSPD 155
           ++++  C+  K PCSP+
Sbjct: 53  LLNYINCLLEKGPCSPE 69


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +2

Query: 503 QEHSRHHKPEH 535
           ++H +HH+P H
Sbjct: 173 EQHPQHHQPHH 183



 Score = 21.4 bits (43), Expect = 9.0
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = +2

Query: 503 QEHSRHHKPEHVLF 544
           Q H  HH+ +H+++
Sbjct: 177 QHHQPHHQQQHMMY 190


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +2

Query: 503 QEHSRHHKPEH 535
           ++H +HH+P H
Sbjct: 175 EQHPQHHQPHH 185



 Score = 21.4 bits (43), Expect = 9.0
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = +2

Query: 503 QEHSRHHKPEHVLF 544
           Q H  HH+ +H+++
Sbjct: 179 QHHQPHHQQQHMMY 192


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 123 CITYKSPCSPD 155
           C+  K PC+PD
Sbjct: 48  CLLEKKPCTPD 58


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +2

Query: 560 RIAFFRRDQRPNASRWCWRSI 622
           R+A++R D   N   W W  +
Sbjct: 193 RVAYWREDIGLNLHHWHWHLV 213


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,859
Number of Sequences: 336
Number of extensions: 4327
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)