Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120040.Seq
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0741 - 22690452-22690528,22690693-22690813,22690871-226909... 30 2.3
11_06_0337 - 22454281-22456399,22458520-22459388 30 2.3
03_02_0857 + 11839400-11839633,11839665-11839787,11839846-11840259 29 3.0
10_08_0639 + 19505934-19506088,19506584-19506633,19508153-195088... 28 7.0
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 7.0
06_02_0086 - 11567390-11567634,11568316-11568341,11571082-115712... 28 7.0
03_01_0612 - 4501595-4501619,4501752-4501906,4502051-4502092,450... 28 7.0
04_03_0627 + 18147789-18148052,18148492-18148955,18149863-18150043 28 9.2
>12_02_0741 -
22690452-22690528,22690693-22690813,22690871-22690951,
22691048-22691096,22691324-22691409,22691494-22691571,
22691647-22691796,22691884-22691922,22692194-22692283,
22692568-22692630,22692722-22692791,22693109-22693155,
22693268-22693330,22693411-22693461,22693702-22693785,
22693932-22693996,22694322-22694378,22694452-22694569,
22694664-22694714,22694789-22694875,22694956-22695035,
22695962-22696127
Length = 590
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -3
Query: 290 VHRLLILFCRANVVLARNASYRTRNVKHHENGFCQLRVHNLVNVHQLSGLFVHMTISNNR 111
V L L +++ R+A +VK + FC + V N++N+H + L+ I N+
Sbjct: 217 VRELRALGLTPDLLACRSAQPLIGSVKEKLSQFCHVPVENILNIHDVPNLWHVPLILRNQ 276
Query: 110 LGH 102
H
Sbjct: 277 KVH 279
>11_06_0337 - 22454281-22456399,22458520-22459388
Length = 995
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 269 IKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDE 367
+KS V++ L +EY+ I G HD+IQY DE
Sbjct: 12 VKSLVNKLGSLLAQEYT-LISGVHDDIQYINDE 43
>03_02_0857 + 11839400-11839633,11839665-11839787,11839846-11840259
Length = 256
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 567 HLVAAVLKSRLQHAYRHVAVLCLSTNWGKQY 475
H +A L RL+HA+ HV LC +G+QY
Sbjct: 41 HFPSASLFHRLRHAH-HVLALCTLRQYGQQY 70
>10_08_0639 +
19505934-19506088,19506584-19506633,19508153-19508893,
19509762-19509922
Length = 368
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = -2
Query: 624 FVSKRHNNFVTNRVVLKR*-HLVAAVLKSRLQHAYRHVAVL 505
F+ K +NF + V ++R ++VA ++K + H YRH+ +L
Sbjct: 160 FMRKARHNFRLDEVGIRRQLNMVARIIKYKDFHLYRHLEML 200
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 630 VNFVSKRHNNFVTNRVVLKR*-HLVAAVLKSRLQHAYRHVAVL 505
V F+ K +NF + V ++R +V+ ++K + H YRH+ L
Sbjct: 422 VGFMRKARHNFRLDEVGIRRQLKIVSQIIKRKDSHLYRHLQKL 464
>06_02_0086 -
11567390-11567634,11568316-11568341,11571082-11571224,
11571569-11571682,11571855-11572888,11574723-11575047,
11576843-11577124
Length = 722
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 314 YSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEKYC--LP 487
YS IDG I Y D+H V+ ++ SK + + HD K ++ + + +P
Sbjct: 517 YSCNIDG----IAYNLDDHILVASKDKESAPSKLQSLWEEHDSRSKMALVSPYFFASDIP 572
Query: 488 QLVDKHNTA 514
+L+ K TA
Sbjct: 573 ELISKPCTA 581
>03_01_0612 -
4501595-4501619,4501752-4501906,4502051-4502092,
4502238-4502279,4502365-4502464,4502825-4502889,
4503140-4503217
Length = 168
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/70 (25%), Positives = 37/70 (52%)
Frame = +2
Query: 266 RIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYT 445
R+K ++ E +L + +++ N++ ++ S+ GSVLK+K KIL D
Sbjct: 35 RLKEELAETSLRLRQMRGEELHRL--NVEQLQELEKSLESGLGSVLKTKSKKILDEIDGL 92
Query: 446 DKKSIETYEK 475
++K ++ E+
Sbjct: 93 ERKRMQLIEE 102
>04_03_0627 + 18147789-18148052,18148492-18148955,18149863-18150043
Length = 302
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 389 NGSVLKSKFAKILKSHDYTDKKSIETYEKYCLPQLVDKHNTATWRYAC 532
NG + K+K + L +HD T K I+ Y C QL D + Y C
Sbjct: 257 NGPMKKNK--EDLVNHDATGPKFIQEYAIQCSKQLFDIYRNKEDLYFC 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,443,124
Number of Sequences: 37544
Number of extensions: 367565
Number of successful extensions: 922
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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