Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120035.Seq
(749 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06) 33 0.25
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07) 31 1.3
SB_25320| Best HMM Match : 7tm_1 (HMM E-Value=3.29305e-43) 29 3.0
SB_33958| Best HMM Match : MAM (HMM E-Value=1.1e-32) 29 4.0
SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12) 29 4.0
SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_47025| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_1442| Best HMM Match : SRCR (HMM E-Value=0) 29 5.3
SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06) 28 7.0
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 9.3
SB_24969| Best HMM Match : DUF645 (HMM E-Value=1.8) 28 9.3
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_43994| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_43634| Best HMM Match : Sushi (HMM E-Value=1.2e-16) 28 9.3
SB_27552| Best HMM Match : Phage_integrase (HMM E-Value=0.31) 28 9.3
SB_26103| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28) 28 9.3
SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)
Length = 1425
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = -3
Query: 306 PRLSVVLSKHSIISLSSVTN*RLPKSLKLLQSRCQILPCRLHPAWDCYNNSNSRWAVVYH 127
PR VV + + S + L + +L+ RLH W C ++ S A++YH
Sbjct: 761 PRTQVVTKLIELADVLSDKHGNLVSFMAVLEGLALPQVTRLHHTWSCLHHQYSSSAIMYH 820
Query: 126 KTL 118
TL
Sbjct: 821 STL 823
>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1362
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 177 AWDCYNNSNSRWAVVYHKTLNSRCRTTLGTASE 79
AW YN + ++W VVY KT + R L E
Sbjct: 1207 AWKIYNETKNKWYVVYTKTAEQKERWRLAFTEE 1239
>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
Length = 1447
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 218 SSFKLFGKRQFVTDDNDIMECLLKTTDNLGEAVSSAYYSESLELPVAENHR 370
SS KL K +TD+N+ ++ LKTTD G ESL + +AE+ R
Sbjct: 606 SSQKLQSKINTLTDENNSLKVRLKTTD--GTIERQIQQVESLTVQLAESER 654
>SB_25320| Best HMM Match : 7tm_1 (HMM E-Value=3.29305e-43)
Length = 391
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 515 RLHLFLLNWPTTLCESSKYSSSFRLVPAADGW 420
R+ +L W + +C Y +FRLVP DG+
Sbjct: 146 RIFTLVLTWLSAMCFYVPYFITFRLVPFRDGY 177
>SB_33958| Best HMM Match : MAM (HMM E-Value=1.1e-32)
Length = 1052
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 612 THYFTNDFAPYLMRFDDNDYNSNRFSDHMSETGYYMFVVKKSEVKP 749
T+ NDF YL + + F+DH + TGYY FV P
Sbjct: 197 TNEIGNDFDWYLGIGETFSRFTGPFADHTTGTGYYAFVESSKPNNP 242
>SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12)
Length = 567
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +3
Query: 498 QE*MKPKYKKSTIQSCATLEQTINHNTNICTVASTQEITHYFTNDFAPYLMRFDDNDYNS 677
+E MK ++K + ++ +T + + + Q Y ND+ Y +DDNDY++
Sbjct: 78 REKMKKTFQKLLTTNLGVDDEDKYVSTPVRYMQNAQYHKDYNDNDYDDY--NYDDNDYDN 135
Query: 678 NRFSDHMSETGYY 716
+ + D+ + Y
Sbjct: 136 DDYDDYNYDDNDY 148
>SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1074
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/80 (23%), Positives = 38/80 (47%)
Frame = +3
Query: 510 KPKYKKSTIQSCATLEQTINHNTNICTVASTQEITHYFTNDFAPYLMRFDDNDYNSNRFS 689
+P+ KST+ + +QT NHN ++C+ ++ + + T+ + R D + F
Sbjct: 924 EPRIAKSTVYT----KQTTNHNAHVCSQSTADQTSASITSYTMRKVDRKDIIRKHGLNFH 979
Query: 690 DHMSETGYYMFVVKKSEVKP 749
+ +T YM S+ +P
Sbjct: 980 FYADDTQIYMSFNPLSDKEP 999
>SB_47025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1010
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 515 RLHLFLLNWP-TTLCESSKYSSSFRLVPAA 429
RLH+ LL P + LC + Y++ RLVPA+
Sbjct: 757 RLHISLLRIPGSLLCPVAAYNNMIRLVPAS 786
>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2103
Score = 28.7 bits (61), Expect = 5.3
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +3
Query: 516 KYKKSTIQSCATLEQTINHNTNICTVASTQEITHY--FTNDFAPYLMRFDDNDYNSNRFS 689
K S IQ+ + +++ T CT + +T Y F ND YL+ D YN + FS
Sbjct: 1685 KLTSSAIQNTVFINESV---TLTCTADANPPVTQYKIFRND--AYLVSVLDGVYNISTFS 1739
Query: 690 DHMSETGYYMFVVKKSEVK 746
++ G Y V + ++ K
Sbjct: 1740 --AADNGTYKCVAENNQGK 1756
>SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06)
Length = 624
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 444 FSSSCRWLVHTNRLLKRFRIISRTG 370
F S RWL+ NRL + +++SR G
Sbjct: 190 FPESARWLIANNRLDEALQVLSRYG 214
>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 683
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 105 DNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAAS 227
DNG C ++ D + + PTP G V SD AAS
Sbjct: 581 DNG----CTTEETMDTMGFIIPPTPTGGHNVTSDKPVMAAS 617
>SB_24969| Best HMM Match : DUF645 (HMM E-Value=1.8)
Length = 336
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 515 RLHLFLLNWP-TTLCESSKYSSSFRLVPAA 429
RLH+ LL P + LC + Y++ RLVPA+
Sbjct: 281 RLHIPLLRIPGSLLCPVAAYNNMIRLVPAS 310
>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Frame = +3
Query: 3 DIGGDTIVNNQTTM---TQINFNASY-TSAPTPSRASFD--NGYSEFCDKQQPNDYLNYY 164
DI GD + ++ T+ Y +PTP R + + + CD P LN Y
Sbjct: 436 DIFGDGFIGSENLTCHSTEFKVYGDYWVPSPTPYRLPGEKIDIFGVKCDLPDPPTKLNDY 495
Query: 165 NNP-TPDG 185
NNP TP G
Sbjct: 496 NNPGTPAG 503
>SB_43994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 403
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 515 RLHLFLLNWP-TTLCESSKYSSSFRLVPAA 429
RLH+ LL P + LC + Y++ RLVPA+
Sbjct: 125 RLHIPLLRIPGSLLCPVAAYNNMIRLVPAS 154
>SB_43634| Best HMM Match : Sushi (HMM E-Value=1.2e-16)
Length = 986
Score = 27.9 bits (59), Expect = 9.3
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Frame = +3
Query: 144 NDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSL-----------LMITI*WNVCSR 290
ND +Y DG +S+S + + +VN L L + I + S
Sbjct: 557 NDGKDYKQTCRGDGGSPFISESYDRKSRGYRWAVNGLKRTHQHAYSSFLTVAILSIMVSI 616
Query: 291 PLIISEKQLVLLIIRNPLSCL 353
II+ L+++II+NPL CL
Sbjct: 617 TAIIANSFLLIVIIKNPLHCL 637
>SB_27552| Best HMM Match : Phage_integrase (HMM E-Value=0.31)
Length = 270
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 515 RLHLFLLNWP-TTLCESSKYSSSFRLVPAA 429
RLH+ LL P + LC + Y++ RLVPA+
Sbjct: 140 RLHIPLLRIPGSLLCPVAAYNNMIRLVPAS 169
>SB_26103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1176
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 515 RLHLFLLNWP-TTLCESSKYSSSFRLVPAA 429
RLH+ LL P + LC + Y++ RLVPA+
Sbjct: 684 RLHIPLLRIPGSLLCPVAAYNNMIRLVPAS 713
>SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28)
Length = 580
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 515 RLHLFLLNWP-TTLCESSKYSSSFRLVPAA 429
RLH+ LL P + LC + Y++ RLVPA+
Sbjct: 450 RLHIPLLRIPGSLLCPVAAYNNMIRLVPAS 479
>SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 105 DNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAAS 227
DNG C ++ D + + PTP G V SD AAS
Sbjct: 218 DNG----CTTEETMDTMGFIIPPTPTGGHNVTSDKPVMAAS 254
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,371,012
Number of Sequences: 59808
Number of extensions: 476434
Number of successful extensions: 1283
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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