Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120034X.Seq
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0110 - 5371536-5372882 31 0.51
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906... 29 2.7
11_06_0263 + 21777178-21777342,21777742-21777823,21777939-217780... 29 3.6
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90... 28 4.7
04_01_0044 + 489486-490012,490903-491332 28 4.7
01_03_0010 - 11608537-11608786,11608816-11608940,11609152-116092... 28 4.7
02_05_1333 - 35761405-35761822,35762551-35763155 28 6.2
01_06_1510 - 37859664-37861319 28 6.2
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177... 23 9.2
>10_02_0110 - 5371536-5372882
Length = 448
Score = 31.5 bits (68), Expect = 0.51
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = -1
Query: 336 ITPDLVMSTVCGCKY----SG-SPCFATLSGACAGFGRHAQTSICTCRRRGHVLPVHNLH 172
I+PD +S + +Y +G S C+ G+ G R Q S+CT R R H L VH
Sbjct: 320 ISPDGKLSFIVTSRYFDGSAGVSSCYHLAFGSNGGCTRE-QVSVCTWRVRLHELRVHRSD 378
Query: 171 ILNC-WRC 151
+N W C
Sbjct: 379 AMNLRWFC 386
>11_03_0026 -
9057965-9058234,9059410-9059522,9059612-9059802,
9060606-9060720,9061781-9061907,9062915-9062990,
9064247-9064365,9065430-9065593,9065666-9065779,
9065966-9066065,9066276-9066340,9068175-9068253,
9069513-9069659,9069904-9070161,9070657-9070852,
9071179-9071402,9072531-9072554
Length = 793
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 334 HARFGNEHCVWVQIQRVALLCHA 266
H FG++H + VQ+Q A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225
>11_06_0263 +
21777178-21777342,21777742-21777823,21777939-21778028,
21778447-21778604,21778852-21778873,21779048-21779175,
21779486-21779685,21780600-21780663,21781594-21781704,
21781804-21781941,21782306-21782448,21782521-21782575,
21782921-21782977,21783093-21783176
Length = 498
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -3
Query: 310 CVWVQIQRVALLCHAIWSMCWIWSACSN 227
C+ V I V CH W +C WS N
Sbjct: 161 CILVLISSVGQSCHKNWVLCIAWSPDGN 188
>04_01_0083 +
904473-905167,905247-905347,905902-905994,907322-907968
Length = 511
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 225 TFEHADQIQHMLQIAWQSRATRCICTHTQCSL 320
+ EH I+H ++I WQ R +C C L
Sbjct: 255 SLEHHQAIRHAVKIGWQKYIKRYLCLAIFCML 286
>04_01_0044 + 489486-490012,490903-491332
Length = 318
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -1
Query: 279 CFATLSGACAGFGRHAQTSICTC 211
C T G C G G + TS C+C
Sbjct: 267 CSPTCKGLCVGCGENLNTSSCSC 289
>01_03_0010 -
11608537-11608786,11608816-11608940,11609152-11609217,
11609741-11609872,11610507-11610608,11610743-11610940,
11611015-11611161,11611321-11611431,11613241-11613780,
11613847-11614003,11614148-11614297,11614375-11614514,
11615346-11615468,11615561-11615677,11617184-11617357,
11617768-11617909,11618076-11618194,11619773-11619955
Length = 991
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +3
Query: 150 DIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHMLQIAWQSRATRCIC 299
D++S + + + + H+D ++ T E DQ+ ++L I C C
Sbjct: 565 DVSSVIGHYDTSKQNVHHMDNEWWETQERGDQVDYVLDIGEVGPRATCCC 614
>02_05_1333 - 35761405-35761822,35762551-35763155
Length = 340
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -1
Query: 279 CFATLSGACAGFGRHAQTSICTC 211
C T G C G G + TS C+C
Sbjct: 293 CSPTCKGLCLGCGENLNTSSCSC 315
>01_06_1510 - 37859664-37861319
Length = 551
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 298 APTHSAHYQIWRDSTDNEVQIALRHRITRMA 390
AP H H+Q++R S +ALRHR R A
Sbjct: 24 APAHG-HHQVFRCSAAKPSPLALRHRAGRPA 53
>09_04_0719 +
19716536-19716857,19716949-19717101,19717493-19717707,
19717785-19717855,19717998-19718157,19718598-19718790,
19718936-19719091,19719229-19719317,19719602-19719695,
19719870-19720039
Length = 540
Score = 23.0 bits (47), Expect(2) = 9.2
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +2
Query: 248 PAHAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKLPYGIELQEWLLEEVIPQVLCTG 427
P HA S + P H V++ +G+I L + L L + + +P CTG
Sbjct: 47 PLHALRSQRPEPAPASASHHDVVVVGAGIIGLSIARHLLLHTPLSVAVADAAVP---CTG 103
Score = 22.6 bits (46), Expect(2) = 9.2
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +2
Query: 233 ACRPNPAHAPDS 268
A PNP+HAP S
Sbjct: 7 ASAPNPSHAPSS 18
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,177,841
Number of Sequences: 37544
Number of extensions: 390407
Number of successful extensions: 1090
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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