Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120033.Seq
(717 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O10312 Cluster: Uncharacterized 42.5 kDa protein; n=12;... 110 4e-23
UniRef50_A0EYU2 Cluster: Vp1054; n=2; Nucleopolyhedrovirus|Rep: ... 65 1e-09
UniRef50_Q9J832 Cluster: ORF105 vp1054 virion protein; n=9; Nucl... 58 3e-07
UniRef50_Q91BH6 Cluster: VP1054 virion protein; n=6; Nucleopolyh... 51 2e-05
UniRef50_A1YRA1 Cluster: Late expression factor-10; n=2; Nucleop... 50 4e-05
UniRef50_Q9PYM1 Cluster: ORF175; n=2; Granulovirus|Rep: ORF175 -... 49 1e-04
UniRef50_Q91ER7 Cluster: ORF138 VP1054; n=5; Granulovirus|Rep: O... 45 0.002
UniRef50_Q8JRT3 Cluster: VP1054; n=1; Phthorimaea operculella gr... 44 0.004
UniRef50_Q6QXI7 Cluster: ORF127; n=1; Agrotis segetum granulovir... 44 0.004
UniRef50_Q9DVR8 Cluster: PxORF115 peptide; n=1; Plutella xyloste... 42 0.015
UniRef50_P40041 Cluster: Uncharacterized protein YER064C; n=3; S... 36 1.00
UniRef50_O42926 Cluster: Vacuolar protein sorting-associated pro... 36 1.3
UniRef50_A3J6M7 Cluster: Putative uncharacterized protein; n=1; ... 33 5.3
UniRef50_A2FVG2 Cluster: Putative uncharacterized protein; n=1; ... 33 5.3
UniRef50_Q54JB3 Cluster: Putative heme A:farnesyltransferase; n=... 33 7.0
UniRef50_P33151 Cluster: Cadherin-5 precursor; n=34; Tetrapoda|R... 33 7.0
>UniRef50_O10312 Cluster: Uncharacterized 42.5 kDa protein; n=12;
Nucleopolyhedrovirus|Rep: Uncharacterized 42.5 kDa
protein - Orgyia pseudotsugata multicapsid polyhedrosis
virus (OpMNPV)
Length = 378
Score = 110 bits (264), Expect = 4e-23
Identities = 42/91 (46%), Positives = 71/91 (78%)
Frame = +3
Query: 243 SSRGRKTILNADDVYECVLIKPIRTEHFRSVDEAGEHNMGVLKIIIDTVIKYIGKLADDE 422
++ R+ LNA V++C+L++P +EHF+S++EAGE NM L+ I+ T+ ++G++A E
Sbjct: 87 AAAARRAFLNAGQVHDCLLLEPAPSEHFKSIEEAGETNMSTLRTILATLTSFLGRVASTE 146
Query: 423 YILIADRMYVDLIYSEFRAIILPQSAYIIKE 515
Y LI DR+++DL+YSEFRA++LPQ AY++++
Sbjct: 147 YFLIVDRLFIDLVYSEFRAVVLPQHAYVLQQ 177
Score = 100 bits (239), Expect = 4e-20
Identities = 48/91 (52%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
Frame = +1
Query: 1 KKPIKLDLCASVKLTPFKPMRPPKPMQCWIHPRRANCKVTRPRNNYSDPDNENDMLHMTV 180
KK + L+ C SVKL P +P+R K MQCW+HPRRA C+V R R+ Y D NE+ +LHMTV
Sbjct: 5 KKLVTLNPCTSVKLVPHRPIRATK-MQCWMHPRRATCRVQRLRDAYHDERNESSLLHMTV 63
Query: 181 LNSVFLNEHAKLYYRHLL--RNDQAEAEKQF 267
+ +FL+E A+ YYR LL R D A A + F
Sbjct: 64 YSDIFLDERARPYYRQLLRKRTDAAAARRAF 94
Score = 50.4 bits (115), Expect = 4e-05
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Frame = +2
Query: 527 SDSESGQSVDVCNELKYPWNLITANSFIVSTDE---------SRQSQYIYRTFLLYNTVL 679
+D++S ++ PWN I + + + RQSQYIY+TFL+Y T+L
Sbjct: 180 ADTDSSDEEPCERGVEPPWNQIVVAAHVAAAHRHEGARYNEWQRQSQYIYQTFLVYATLL 239
Query: 680 TAILKQNNPF 709
T ILKQ+NPF
Sbjct: 240 TTILKQSNPF 249
>UniRef50_A0EYU2 Cluster: Vp1054; n=2; Nucleopolyhedrovirus|Rep:
Vp1054 - Ecotropis obliqua NPV
Length = 366
Score = 65.3 bits (152), Expect = 1e-09
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Frame = +3
Query: 207 RKIVLSALVAQRSSRGRKTILNADDVYECVLIKPIRT-EHFRSVDEAGEHNMGVLKIIID 383
+K S L++ + R +NADD+Y V + I + E F +DE GE M +L ++I
Sbjct: 92 KKPYYSVLISPQDIAKRGIYMNADDLYAYVHLNQIDSDEQFFGIDENGERQMQILTMVIK 151
Query: 384 TVIKYIGKLADDEYILIADRMYVDLIYSEFRAIILPQSAYII 509
++I + + + IL D + +DL+YS +R ++LPQ Y I
Sbjct: 152 SIIDCLNQCSQ-YVILCVDELMIDLLYSSYRIVVLPQKLYAI 192
Score = 51.2 bits (117), Expect = 2e-05
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +2
Query: 608 IVSTDESRQSQYIYRTFLLYNTVLTAILKQNNPFN 712
+ +TD+ SQ +YRTFL+YNTVL+ ILKQ NPFN
Sbjct: 209 VPTTDDCVTSQNVYRTFLVYNTVLSMILKQRNPFN 243
Score = 45.6 bits (103), Expect = 0.001
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 18/96 (18%)
Frame = +1
Query: 1 KKPIKLDLCASVKLTPFKPMRPPKPMQCWIHPRRANCKVTRPR-NNYSDPDNENDML--- 168
K +K C S KLT FKP++ P C HP RANC+ + +N + +E++ +
Sbjct: 5 KNVVKFKQCVSEKLTVFKPLKRPPRTVCRFHPLRANCRAIKQHDDNLQNALDESESVFDE 64
Query: 169 --------------HMTVLNSVFLNEHAKLYYRHLL 234
H T++N+ +LN K YY L+
Sbjct: 65 ATLLVDQYLSKYFYHETIINTFYLNYKKKPYYSVLI 100
>UniRef50_Q9J832 Cluster: ORF105 vp1054 virion protein; n=9;
Nucleopolyhedrovirus|Rep: ORF105 vp1054 virion protein -
Spodoptera exigua MNPV
Length = 346
Score = 57.6 bits (133), Expect = 3e-07
Identities = 30/75 (40%), Positives = 48/75 (64%)
Frame = +1
Query: 10 IKLDLCASVKLTPFKPMRPPKPMQCWIHPRRANCKVTRPRNNYSDPDNENDMLHMTVLNS 189
++L+ CAS KLTPF+P++ QC IH RANCKV + + +D + +N H+T+LN
Sbjct: 10 VRLNRCASEKLTPFRPIKVTS-TQCPIHLFRANCKVIKRYDAENDTNFDN---HLTILNG 65
Query: 190 VFLNEHAKLYYRHLL 234
V+ N + + +Y L+
Sbjct: 66 VYQNYNREPFYLALV 80
Score = 54.4 bits (125), Expect = 3e-06
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +3
Query: 255 RKTILNADDVYECVLIKPIRT-EHFRSVDEAGEHNMGVLKIIIDTVIKYIGKLADDEYIL 431
R NA+D+ V + + E F +D AGE N+ ++ +I ++ AD YIL
Sbjct: 89 RGVYTNANDMVLYVELHRLDDDERFFGIDAAGERNVATIRNVIKMIMDAFAVCAD-RYIL 147
Query: 432 IADRMYVDLIYSEFRAIILPQ 494
+ D + VDL+YS FR+IILPQ
Sbjct: 148 MIDELQVDLVYSIFRSIILPQ 168
Score = 52.0 bits (119), Expect = 1e-05
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = +2
Query: 617 TDESRQSQYIYRTFLLYNTVLTAILKQNNPFN 712
T+ + +SQ IYRTFL+YNTVLT +LKQ+NPFN
Sbjct: 193 TEAAFESQLIYRTFLMYNTVLTMLLKQSNPFN 224
>UniRef50_Q91BH6 Cluster: VP1054 virion protein; n=6;
Nucleopolyhedrovirus|Rep: VP1054 virion protein -
Spodoptera litura multicapsid nucleopolyhedrovirus
(SpltMNPV)
Length = 352
Score = 51.2 bits (117), Expect = 2e-05
Identities = 23/64 (35%), Positives = 41/64 (64%)
Frame = +3
Query: 318 EHFRSVDEAGEHNMGVLKIIIDTVIKYIGKLADDEYILIADRMYVDLIYSEFRAIILPQS 497
E F ++DEAGE +M L+ + ++I+Y+ Y+L+ D +D+IYS+ R ++LPQ
Sbjct: 123 EKFFTIDEAGERDMVALRRTVKSLIEYMHSSIRG-YVLMFDEPQIDVIYSQLRTVLLPQR 181
Query: 498 AYII 509
Y++
Sbjct: 182 MYML 185
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 608 IVSTDESRQSQYIYRTFLLYNTVLTAILKQNNPFN 712
+ TD S +SQ IY+TFL+YNT LT +L Q NPFN
Sbjct: 204 VPDTDASVESQNIYKTFLVYNTTLTMMLNQRNPFN 238
Score = 45.6 bits (103), Expect = 0.001
Identities = 26/74 (35%), Positives = 35/74 (47%)
Frame = +1
Query: 13 KLDLCASVKLTPFKPMRPPKPMQCWIHPRRANCKVTRPRNNYSDPDNENDMLHMTVLNSV 192
K + C S K FKP+ K QC IHP RANC+V + + + D + + H T +
Sbjct: 18 KYNQCVSEKSVSFKPITFRKS-QCPIHPLRANCRVIK---TFDEDDGKEIVYHFTFIEGY 73
Query: 193 FLNEHAKLYYRHLL 234
F YY LL
Sbjct: 74 FKQYDGTPYYMRLL 87
>UniRef50_A1YRA1 Cluster: Late expression factor-10; n=2;
Nucleopolyhedrovirus|Rep: Late expression factor-10 -
Maruca vitrata MNPV
Length = 78
Score = 50.4 bits (115), Expect = 4e-05
Identities = 25/42 (59%), Positives = 28/42 (66%)
Frame = +3
Query: 3 ETDQVRPLCLGEINXXXXXXXXXXXXMLDTSSTSELQSNAST 128
E DQ+R +CLGEI+ MLDTSSTSELQSNAST
Sbjct: 37 EKDQIRSMCLGEIDTFQTDATAEANAMLDTSSTSELQSNAST 78
>UniRef50_Q9PYM1 Cluster: ORF175; n=2; Granulovirus|Rep: ORF175 -
Xestia c-nigrum granulosis virus (XnGV) (Xestia
c-nigrumgranulovirus)
Length = 323
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/50 (42%), Positives = 36/50 (72%)
Frame = +2
Query: 563 NELKYPWNLITANSFIVSTDESRQSQYIYRTFLLYNTVLTAILKQNNPFN 712
++++ P N I + + T+E+ SQ IY++F++YNTVLT +L++ NPFN
Sbjct: 170 DDVEPPLNSIFNHETLPDTEEATASQDIYKSFVVYNTVLTMMLREANPFN 219
Score = 47.6 bits (108), Expect = 3e-04
Identities = 25/85 (29%), Positives = 47/85 (55%)
Frame = +3
Query: 255 RKTILNADDVYECVLIKPIRTEHFRSVDEAGEHNMGVLKIIIDTVIKYIGKLADDEYILI 434
RK +L + V K + E F ++ EAGE + +++++ +++ A+ +L+
Sbjct: 84 RKNLLTVGAMICGVQFKEMPPETFYAITEAGERDSELIRMVCRQAYRFVYNHANRLVLLL 143
Query: 435 ADRMYVDLIYSEFRAIILPQSAYII 509
D +YVD +YS+ + +ILPQ Y I
Sbjct: 144 KD-LYVDCLYSQRQCVILPQELYCI 167
Score = 34.7 bits (76), Expect = 2.3
Identities = 23/81 (28%), Positives = 35/81 (43%)
Frame = +1
Query: 31 SVKLTPFKPMRPPKPMQCWIHPRRANCKVTRPRNNYSDPDNENDMLHMTVLNSVFLNEHA 210
S + TPF P+ + +C HP R NC++T+ N H T + ++N A
Sbjct: 15 SERSTPFVPLTVART-RCRFHPSRVNCRLTKILGL-----NSVSYEHFTFVAVCYVNTDA 68
Query: 211 KLYYRHLLRNDQAEAEKQFST 273
+ Y+ LL D K T
Sbjct: 69 RPYFEMLLGADSDGLRKNLLT 89
>UniRef50_Q91ER7 Cluster: ORF138 VP1054; n=5; Granulovirus|Rep:
ORF138 VP1054 - Cydia pomonella granulosis virus (CpGV)
(Cydia pomonellagranulovirus)
Length = 332
Score = 44.8 bits (101), Expect = 0.002
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +2
Query: 620 DESRQSQYIYRTFLLYNTVLTAILKQNNPFN 712
++S SQ+IY+ FL+YNTVLT +L + NPFN
Sbjct: 197 EDSVASQHIYKAFLVYNTVLTMMLSEKNPFN 227
Score = 40.7 bits (91), Expect = 0.035
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 15/87 (17%)
Frame = +3
Query: 318 EHFRSVDEAGEHNMGVLKIIIDTVIKYI--------GKLADD------EYILIADRMYVD 455
E RS++EAGE+++ ++K ++ V +Y+ G DD + L+ MYV
Sbjct: 98 EELRSLEEAGEYDVQIVKKVLRFVYEYLNSDRGALNGHAKDDIVHEDAKVYLLFKEMYVQ 157
Query: 456 LIYSEFRAIILPQSAY-IIKEITQKAI 533
+YS + IILPQ Y + KE + A+
Sbjct: 158 CLYSHLQCIILPQEMYCLYKEGEEPAL 184
Score = 33.5 bits (73), Expect = 5.3
Identities = 19/78 (24%), Positives = 37/78 (47%)
Frame = +1
Query: 19 DLCASVKLTPFKPMRPPKPMQCWIHPRRANCKVTRPRNNYSDPDNENDMLHMTVLNSVFL 198
+L ++ + ++P+ + QC +HP R NC + + + N H+T L++ +
Sbjct: 5 ELVTALSIAVYQPVHVARK-QCRLHPNRTNCALLQTKGL-----NRIYCEHITTLDARYC 58
Query: 199 NEHAKLYYRHLLRNDQAE 252
+ + YY L ND E
Sbjct: 59 STNGDPYYEWLTLNDNNE 76
>UniRef50_Q8JRT3 Cluster: VP1054; n=1; Phthorimaea operculella
granulovirus|Rep: VP1054 - Phthorimaea operculella
granulovirus
Length = 328
Score = 44.0 bits (99), Expect = 0.004
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 620 DESRQSQYIYRTFLLYNTVLTAILKQNNPFN 712
+++ SQ +Y+TF++YNTVLT +LK NPFN
Sbjct: 194 EDATLSQDVYKTFIVYNTVLTMMLKSENPFN 224
Score = 38.7 bits (86), Expect = 0.14
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 14/87 (16%)
Frame = +3
Query: 291 CVLIKPIRTEHFRSVDEAGEHNMGVLKIIIDTVIKYIGKLADD--------------EYI 428
CV + + R+V++AGE+N +++ ++ + +Y+ + D Y+
Sbjct: 87 CVQFEDNVDDKLRAVEKAGEYNFEIIRHVLKYINQYVYNVCGDLNSHAKTETKKTEQVYV 146
Query: 429 LIADRMYVDLIYSEFRAIILPQSAYII 509
L+ D MYV +YS R IILP Y I
Sbjct: 147 LLTD-MYVQCLYSPTRCIILPIQMYCI 172
>UniRef50_Q6QXI7 Cluster: ORF127; n=1; Agrotis segetum
granulovirus|Rep: ORF127 - Agrotis segetum granulosis
virus (AsGV) (Agrotis segetumgranulovirus)
Length = 331
Score = 44.0 bits (99), Expect = 0.004
Identities = 21/43 (48%), Positives = 28/43 (65%)
Frame = +2
Query: 584 NLITANSFIVSTDESRQSQYIYRTFLLYNTVLTAILKQNNPFN 712
N I S + E+ SQ IY++FL YNTVLT +L++ NPFN
Sbjct: 185 NKIFTFSSLPEFTEATASQDIYKSFLTYNTVLTMLLQEKNPFN 227
Score = 43.6 bits (98), Expect = 0.005
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Frame = +3
Query: 309 IRTEHFRSVDEAGEHNMGVLKIIIDTVIKYIGKLADD---------------EYILIADR 443
+ E S+ EAGE NM +K+++ +V K++ D Y+L+
Sbjct: 95 VHGEKLGSIKEAGERNMSSVKLVLKSVYKFLNNDRTDLNGNARDASARDGNKTYVLLKS- 153
Query: 444 MYVDLIYSEFRAIILPQSAYII 509
MYVD +YS+ + IILPQ Y I
Sbjct: 154 MYVDCLYSDIQCIILPQEMYCI 175
>UniRef50_Q9DVR8 Cluster: PxORF115 peptide; n=1; Plutella xylostella
granulovirus|Rep: PxORF115 peptide - Plutella xylostella
granulovirus
Length = 311
Score = 41.9 bits (94), Expect = 0.015
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +2
Query: 578 PWNLITANSFIVSTDESRQSQYIYRTFLLYNTVLTAILKQNNPFN 712
P N + ++ + DES SQ IY+ F++YNTVLT +L N FN
Sbjct: 169 PINRLLSHFTVPECDESVVSQQIYKNFIVYNTVLTMMLNGPNMFN 213
Score = 35.9 bits (79), Expect = 1.00
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 312 RTEHFRSVDEAGEHNMGVLKIIIDTVIKYIGKLADDEYILIADRMYVDLIYSEFRAIILP 491
R + + V G +K++ V ++ K YIL+ + M+VD +YS+ IILP
Sbjct: 97 RYDKYYCVCNGGSREYAQIKLVFKAVYNFLYKNNSSLYILL-NTMFVDCLYSDLDCIILP 155
Query: 492 -QSAYIIKEITQKAI 533
+ I KE T I
Sbjct: 156 LEMVCIYKEGTAPPI 170
>UniRef50_P40041 Cluster: Uncharacterized protein YER064C; n=3;
Saccharomyces|Rep: Uncharacterized protein YER064C -
Saccharomyces cerevisiae (Baker's yeast)
Length = 505
Score = 35.9 bits (79), Expect = 1.00
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = -3
Query: 439 SAIKMYSSSASL-PMYLMTVSMMIFKTPMLCSPASSTLLKCSVRIGLINTHSYTSSALRI 263
S +K Y ASL P+ + M + + P++CS S ++ +++ HS T A
Sbjct: 387 SLVKDYGFDASLAPINEIIYHMTLHQYPLVCSNKQSNPMRPHSTSEVLSAHSSTKDASTP 446
Query: 262 -VFLPRLDRCATSADNTIL 209
PR+ R +TSAD+TI+
Sbjct: 447 GKEEPRVTRSSTSADSTII 465
>UniRef50_O42926 Cluster: Vacuolar protein sorting-associated protein
13b; n=1; Schizosaccharomyces pombe|Rep: Vacuolar protein
sorting-associated protein 13b - Schizosaccharomyces
pombe (Fission yeast)
Length = 3131
Score = 35.5 bits (78), Expect = 1.3
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +3
Query: 402 GKLADDEYILIADRMYVDLIYSEFRAIILPQSAYIIKEITQKAIVKAGKVSTFVMNSNIL 581
GK A DEY+ A+ VD++Y + I+ S YI+K + +VS +NS+ L
Sbjct: 2904 GKYAFDEYLYHAEIQNVDILYISTKHFIITGSNYIVKIAVPVKQISGLRVSEHDLNSSCL 2963
>UniRef50_A3J6M7 Cluster: Putative uncharacterized protein; n=1;
Flavobacteria bacterium BAL38|Rep: Putative
uncharacterized protein - Flavobacteria bacterium BAL38
Length = 404
Score = 33.5 bits (73), Expect = 5.3
Identities = 16/65 (24%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Frame = +3
Query: 399 IGKLADDEYILIADRMYVDLI-----YSEFRAIILPQSAYIIKEITQKAIVKAGKVSTFV 563
+GKL + + +A ++DL+ YSEF+ ++ + +I I+ ++++K+GK++ ++
Sbjct: 213 VGKLLNYKAAFLAT--FIDLVTTKYKYSEFKQLLPVEKTKMIASISDESLLKSGKINDYL 270
Query: 564 MNSNI 578
+ N+
Sbjct: 271 QDYNV 275
>UniRef50_A2FVG2 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 450
Score = 33.5 bits (73), Expect = 5.3
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 3/133 (2%)
Frame = -3
Query: 586 IPRIFEFITNVDTLPAFTIAFCVISFIMYAL*GKIMALNSE*IKSTYMRSAIKMYSSSAS 407
I ++ D +P + FC +++ L I NS+ + YS+S+
Sbjct: 63 IKKLNNIFNKTDDMPYYAEEFCYSYNLLFHLKDYITPDNSDFSANILTLVCTICYSASSC 122
Query: 406 LPMYLMTVSMMIFKTPMLCSPASSTLLKCSVRI-GLINTHSYTSSAL--RIVFLPRLDRC 236
+ L + F PML SS + S+RI G I S S+ + + FL +L +
Sbjct: 123 IEQILEGNFLEAFLQPMLGEGFSSECVSLSIRIAGCIAADSQESAEVIKQYDFLEKLSKW 182
Query: 235 ATSADNTILRARL 197
D +L A L
Sbjct: 183 IDIGDQKLLDASL 195
>UniRef50_Q54JB3 Cluster: Putative heme A:farnesyltransferase; n=1;
Dictyostelium discoideum AX4|Rep: Putative heme
A:farnesyltransferase - Dictyostelium discoideum AX4
Length = 449
Score = 33.1 bits (72), Expect = 7.0
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 130 NNYSDPDNENDMLHMTVLNSVFLNEH---AKLYYRHLLRNDQAEAEKQFSTPTTCTS 291
NNYS+ +N N+ + +LN FLN+ K+ Y ++ ++ +ST TT TS
Sbjct: 48 NNYSNNNNNNNNI---ILNDKFLNKQQNDKKIIYNNIFEEKNQFLKRIYSTSTTTTS 101
>UniRef50_P33151 Cluster: Cadherin-5 precursor; n=34; Tetrapoda|Rep:
Cadherin-5 precursor - Homo sapiens (Human)
Length = 784
Score = 33.1 bits (72), Expect = 7.0
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 88 IHPRRANCKVT-RPRNNYSDPDNENDMLHMTVLNSVFLNEHAKLYYRHLLRNDQAEAEKQ 264
I PR K T NN++ DN ++ ++TV F EH K+++ ++ +D +
Sbjct: 507 ITPRNVKFKFTLNTENNFTLTDNHDNTANITVKYGQFDREHTKVHFLPVVISDNGMPSRT 566
Query: 265 FSTPTTCTSAC*LNQ 309
T T + C N+
Sbjct: 567 -GTSTLTVAVCKCNE 580
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,165,624
Number of Sequences: 1657284
Number of extensions: 11828090
Number of successful extensions: 36368
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 34856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36342
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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