Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120033.Seq
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 36 0.008
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 31 0.22
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 29 0.88
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 29 0.88
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 29 0.88
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 29 0.88
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 29 0.88
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 29 0.88
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 29 0.88
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 29 0.88
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 29 0.88
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 29 0.88
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 29 0.88
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 4.7
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 25 8.2
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 25 8.2
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 25 8.2
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 35.5 bits (78), Expect = 0.008
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +3
Query: 402 GKLADDEYILIADRMYVDLIYSEFRAIILPQSAYIIKEITQKAIVKAGKVSTFVMNSNIL 581
GK A DEY+ A+ VD++Y + I+ S YI+K + +VS +NS+ L
Sbjct: 2904 GKYAFDEYLYHAEIQNVDILYISTKHFIITGSNYIVKIAVPVKQISGLRVSEHDLNSSCL 2963
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 30.7 bits (66), Expect = 0.22
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -3
Query: 541 AFTIAFCVISFIMYAL*GKIMALNSE*IKSTYMRSAIKMYSSSASLPM-YLMTVSMMIFK 365
A+ I F ISF MYA+ + L + ++S + +K+ S + + YL+ + IF
Sbjct: 1005 AYAIGFYSISFPMYAIHASVKFLKLDYLRSLMNKLNLKIVMRSLVMALKYLLLAFLGIFI 1064
Query: 364 TPML 353
P+L
Sbjct: 1065 LPLL 1068
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.88
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 169 HMTVLNSVFLNEHAKLYY--RHLLRNDQAEAEKQFS 270
H T S+F NEH K Y HL +Q AE+ FS
Sbjct: 65 HFTEYPSLFPNEHTKRQYTLNHLEELEQQFAERMFS 100
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.88
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 169 HMTVLNSVFLNEHAKLYY--RHLLRNDQAEAEKQFS 270
H T S+F NEH K Y HL +Q AE+ FS
Sbjct: 65 HFTEYPSLFPNEHTKRQYTLNHLEELEQQFAERMFS 100
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.88
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 169 HMTVLNSVFLNEHAKLYY--RHLLRNDQAEAEKQFS 270
H T S+F NEH K Y HL +Q AE+ FS
Sbjct: 65 HFTEYPSLFPNEHTKRQYTLNHLEELEQQFAERMFS 100
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.88
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 169 HMTVLNSVFLNEHAKLYY--RHLLRNDQAEAEKQFS 270
H T S+F NEH K Y HL +Q AE+ FS
Sbjct: 65 HFTEYPSLFPNEHTKRQYTLNHLEELEQQFAERMFS 100
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.88
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 169 HMTVLNSVFLNEHAKLYY--RHLLRNDQAEAEKQFS 270
H T S+F NEH K Y HL +Q AE+ FS
Sbjct: 65 HFTEYPSLFPNEHTKRQYTLNHLEELEQQFAERMFS 100
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.88
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 169 HMTVLNSVFLNEHAKLYY--RHLLRNDQAEAEKQFS 270
H T S+F NEH K Y HL +Q AE+ FS
Sbjct: 65 HFTEYPSLFPNEHTKRQYTLNHLEELEQQFAERMFS 100
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.88
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 169 HMTVLNSVFLNEHAKLYY--RHLLRNDQAEAEKQFS 270
H T S+F NEH K Y HL +Q AE+ FS
Sbjct: 65 HFTEYPSLFPNEHTKRQYTLNHLEELEQQFAERMFS 100
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.88
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 169 HMTVLNSVFLNEHAKLYY--RHLLRNDQAEAEKQFS 270
H T S+F NEH K Y HL +Q AE+ FS
Sbjct: 65 HFTEYPSLFPNEHTKRQYTLNHLEELEQQFAERMFS 100
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.88
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 169 HMTVLNSVFLNEHAKLYY--RHLLRNDQAEAEKQFS 270
H T S+F NEH K Y HL +Q AE+ FS
Sbjct: 65 HFTEYPSLFPNEHTKRQYTLNHLEELEQQFAERMFS 100
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.88
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 169 HMTVLNSVFLNEHAKLYY--RHLLRNDQAEAEKQFS 270
H T S+F NEH K Y HL +Q AE+ FS
Sbjct: 65 HFTEYPSLFPNEHTKRQYTLNHLEELEQQFAERMFS 100
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 28.7 bits (61), Expect = 0.88
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 169 HMTVLNSVFLNEHAKLYY--RHLLRNDQAEAEKQFS 270
H T S+F NEH K Y HL +Q AE+ FS
Sbjct: 65 HFTEYPSLFPNEHTKRQYTLNHLEELEQQFAERMFS 100
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 151 NENDMLHMTVLNSVFLNEHAKLYYRHLLRNDQA 249
N + LH TVL + L A+ YY+ L N +A
Sbjct: 449 NSFNTLHKTVLEMLDLQRQAEHYYKRKLDNAKA 481
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 25.4 bits (53), Expect = 8.2
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 371 DHHRYGHQVHWQTGRRRVHFDSGP--HVCRFNLFRI*GHYFASERVHYKGDY 520
D+HR+ W RRR HF SG V F R+ + +ERV G Y
Sbjct: 282 DYHRFHSPTDWVVERRR-HF-SGELFSVSPFMARRLGNLFILNERVALMGRY 331
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = +1
Query: 142 DPDNENDMLHMTVLN--SVFLNEH 207
DPDN D++ MTV N FL +H
Sbjct: 904 DPDNSRDVIDMTVKNYSLAFLIDH 927
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 332 RRRGWRTQHGRFKDHHRYGHQVHWQTGRRRVHFD 433
R+R QH F++H R G +H T +++H +
Sbjct: 498 RQRLDELQHSIFEEHKRVGSDLHQDT-EKKLHLE 530
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,621
Number of Sequences: 5004
Number of extensions: 51484
Number of successful extensions: 159
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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