BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120033.Seq (717 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207... 31 1.2 12_01_0950 - 9463148-9464358,9465326-9465644 29 2.8 07_03_0981 + 23112253-23112538,23112842-23112885 28 6.4 01_04_0010 - 15058175-15058195,15058320-15058430,15059031-150592... 28 6.4 06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,813... 28 8.5 >02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691, 2076798-2076837,2076930-2077006,2077095-2077311, 2077482-2078132 Length = 467 Score = 30.7 bits (66), Expect = 1.2 Identities = 19/69 (27%), Positives = 31/69 (44%) Frame = -3 Query: 355 LCSPASSTLLKCSVRIGLINTHSYTSSALRIVFLPRLDRCATSADNTILRARLKTRCLTR 176 LC +ST L C+++ I T S +SS+L + D S+ + + +A L+ Sbjct: 41 LCGSTNSTSLSCAIQSSNIKTESISSSSLPKILPFSTDSNGESSLSRMSQAEFSDPILSS 100 Query: 175 SCATCRFRY 149 S C Y Sbjct: 101 SSTFCTSLY 109 >12_01_0950 - 9463148-9464358,9465326-9465644 Length = 509 Score = 29.5 bits (63), Expect = 2.8 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = +3 Query: 135 LFRSR*RKRHVAH---DRVKQRVFKRARKIVLSALVAQRSSRGRKTIL 269 +F +R R + H RVKQ+ FK+ R +L L++QR+ + IL Sbjct: 124 VFGARLATREIKHRRAKRVKQKFFKQNRGHLLEQLISQRADIAERMIL 171 >07_03_0981 + 23112253-23112538,23112842-23112885 Length = 109 Score = 28.3 bits (60), Expect = 6.4 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = +3 Query: 204 ARKIVLSALVAQRSSRGRKTILNADDVYECVLIKPIR 314 A ++ Q +RGR+ L AD+V +L+ P+R Sbjct: 11 AARVPAELCQGQGGARGRRRRLRADEVLRALLVAPVR 47 >01_04_0010 - 15058175-15058195,15058320-15058430,15059031-15059246, 15059327-15059505,15059655-15059820,15059914-15059972, 15060065-15060107,15060285-15060354,15060458-15060547, 15060621-15060742,15060777-15060808,15060876-15061064, 15061148-15061241,15061325-15061412,15061498-15061718, 15061924-15061997,15062081-15062363,15062455-15062589, 15062721-15062942,15063029-15063208,15063305-15063402, 15063522-15063634,15064156-15064259,15064400-15064522, 15064857-15065192 Length = 1122 Score = 28.3 bits (60), Expect = 6.4 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = +3 Query: 180 VKQRVFKRA-RKIVLSALVAQRSSRGRKTILNADDVYECV 296 ++++V +RA +K+ L ALV Q+ + +N DD+ + V Sbjct: 662 IEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDDLLQMV 701 >06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088, 8135179-8135256,8135442-8135697,8136427-8136515, 8137229-8137376,8137460-8137899,8138048-8138562, 8138791-8139061,8139231-8139492,8139583-8139938 Length = 1004 Score = 27.9 bits (59), Expect = 8.5 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 1/95 (1%) Frame = +1 Query: 13 KLDLCASVKLTPFKPMRP-PKPMQCWIHPRRANCKVTRPRNNYSDPDNENDMLHMTVLNS 189 KL L A +L + P P P P R + + ++ SD D + D LH T ++ Sbjct: 888 KLGLDAGFRLETNSVVPPTPAPRSVRPPPSRRRARRSPSSSDDSDIDGQEDNLHATSVSR 947 Query: 190 VFLNEHAKLYYRHLLRNDQAEAEKQFSTPTTCTSA 294 V R + A K + PT S+ Sbjct: 948 VAATPVVMTAARSQRASKTAAMSKMSAKPTVAASS 982 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,528,139 Number of Sequences: 37544 Number of extensions: 313613 Number of successful extensions: 872 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 855 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 872 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1862792824 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -