Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120027.Seq
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0003 + 11396076-11396386,11398803-11398869,11399194-113996... 30 2.3
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 29 3.1
05_05_0080 - 22243175-22243226,22243342-22243389,22243485-222435... 29 3.1
01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099... 29 3.1
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 29 3.1
08_02_1499 - 27558872-27559015,27559544-27559666,27560214-275603... 29 4.1
08_02_1054 + 23980962-23981096,23981208-23981420,23983062-239831... 29 4.1
09_04_0170 + 15310240-15310397,15310523-15310605,15310689-153106... 29 5.4
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 29 5.4
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 29 5.4
12_01_0441 + 3484003-3484374,3485071-3485151,3485242-3485514,348... 28 7.2
>09_03_0003 +
11396076-11396386,11398803-11398869,11399194-11399698,
11400903-11401038,11401186-11401257,11401891-11401923,
11401924-11402047,11402387-11402437,11403437-11403563,
11404230-11404298,11404369-11404486,11404755-11405151
Length = 669
Score = 29.9 bits (64), Expect = 2.3
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Frame = +3
Query: 261 VNNQTTMTQINFNASY-TSAPTPSRAS---FDNGYSEFCDKQQPNDYLNYYNNPTPDGAD 428
V + T +NF+ + TS PT D Y+EF K Q ++ YYN +
Sbjct: 174 VTSPATSIPLNFSWTIPTSWPTIEAVPAYYVDVHYTEF-QKPQGREFNTYYNGALWPANE 232
Query: 429 TVVSDSETAAASNFLASVNSLTDDNDIWNVC 521
++ A F S + T DN +N+C
Sbjct: 233 NPITPPYLLADYTF--STSQYTSDNGFYNIC 261
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 274 VWLFTIVRRQCQLAKKCRAHHKDIDIFKHLCPELQ 170
V+L T R+ C A H+ +D+FKH EL+
Sbjct: 70 VFLLTASRQNCNAASILLFLHRVVDVFKHYFEELE 104
>05_05_0080 -
22243175-22243226,22243342-22243389,22243485-22243540,
22243752-22243819,22244712-22244773,22245166-22245214,
22245818-22245899,22245987-22246064,22246441-22246499,
22246727-22246805,22246946-22247218
Length = 301
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +3
Query: 300 ASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLAS 479
A S+ P+ ++ G + QP+ YLN + P+G +V D A +A+
Sbjct: 175 AENASSVLPATKTYHLGLRRDEETLQPSIYLNNLPDKIPEGTRVLVVDPMLATGGTIVAA 234
Query: 480 VNSLTD 497
++ L +
Sbjct: 235 IDLLVE 240
>01_06_1486 -
37709159-37709377,37709558-37709821,37709903-37709995,
37710387-37710581,37710665-37710763,37710884-37711132,
37711264-37711467,37711543-37711602,37711731-37711913,
37712382-37712999,37713101-37713169,37713275-37713853
Length = 943
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 375 QPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDIWNVCSRPLIISEKQ 551
+P + PT A S S T AA ASV+ ++ + +V RP+++ E++
Sbjct: 113 RPRPPRSQQQTPTTTAAAAADSRSPTPAAPPQTASVSQREEEKSLASVVKRPMLLDERR 171
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 274 VWLFTIVRRQCQLAKKCRAHHKDIDIFKHLCPELQ 170
V+L T R+ C A H+ +D+FKH EL+
Sbjct: 69 VFLLTASRQNCNAASILLFLHRVVDVFKHYFEELE 103
>08_02_1499 -
27558872-27559015,27559544-27559666,27560214-27560312,
27561257-27561307
Length = 138
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -3
Query: 541 EIISGLEQTFHISLSSVNELTLAKKFEAAAV 449
EI+ GLE+ FHIS+ + ++A +AAA+
Sbjct: 93 EIVMGLEEEFHISVEESSAQSIATVEDAAAL 123
>08_02_1054 +
23980962-23981096,23981208-23981420,23983062-23983157,
23983420-23983565,23983679-23983898,23984502-23984561
Length = 289
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 59 WPSPSRIRDLIHKTFAL 9
WP+P R+RDLI +T +L
Sbjct: 45 WPAPDRVRDLIRRTRSL 61
>09_04_0170 +
15310240-15310397,15310523-15310605,15310689-15310697,
15310852-15310940,15311514-15311587,15311731-15311781,
15311887-15311963,15313865-15314463
Length = 379
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 270 QTTMTQINFNASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGA 425
+TT T +S S+P+P +A+ D+G S C P D Y+ DGA
Sbjct: 302 ETTTTSSTTTSS--SSPSPPQATKDDGASPQC--SFPEDIQTYFGCAAEDGA 349
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 14 QMFCESNHEFDLDSASCKPIVYDRTGSGCA 103
QM+ E + S C+ Y RTG GCA
Sbjct: 4 QMWMRKEAEDERTSGGCEETAYARTGGGCA 33
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +3
Query: 303 SYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTV-VSDSETAAASNFLAS 479
S TS P+PS S DN E C+K + Y P P D V + S+ + +S
Sbjct: 412 SGTSLPSPSSTSMDNTTGE-CNK---DAYSEDEKKPHPRSVDCVGMGASDEPSHDTLSSS 467
Query: 480 VNSLTDDNDIWNVCSRPLIIS 542
V SL ++ ++P IS
Sbjct: 468 VTSLNKGLSNISIDNKPKSIS 488
>12_01_0441 +
3484003-3484374,3485071-3485151,3485242-3485514,
3485695-3485826,3485903-3486076,3486164-3486393,
3486562-3486679,3486717-3486743,3486948-3487079,
3487189-3487323,3487393-3487599,3487772-3487936
Length = 681
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 659 NHRQLELNGSWTNTWTIHKVWW 724
N R +NGSW W + K+ W
Sbjct: 361 NRRLAAVNGSWLGAWGLEKLLW 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,640,108
Number of Sequences: 37544
Number of extensions: 425028
Number of successful extensions: 1171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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