BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120027.Seq (774 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78 SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06) 31 1.4 SB_35564| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4 SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 29 4.2 SB_34917| Best HMM Match : zf-C2H2 (HMM E-Value=3.9e-37) 29 4.2 SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2 SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3 SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06) 28 7.3 >SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1362 Score = 31.5 bits (68), Expect = 0.78 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -1 Query: 414 AWDCYNNSNSRWAVVYHKTLNSRCRTTLGTASE 316 AW YN + ++W VVY KT + R L E Sbjct: 1207 AWKIYNETKNKWYVVYTKTAEQKERWRLAFTEE 1239 >SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06) Length = 1425 Score = 30.7 bits (66), Expect = 1.4 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -1 Query: 426 RLHPAWDCYNNSNSRWAVVYHKTL 355 RLH W C ++ S A++YH TL Sbjct: 800 RLHHTWSCLHHQYSSSAIMYHSTL 823 >SB_35564| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1028 Score = 29.9 bits (64), Expect = 2.4 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Frame = +3 Query: 246 WRRTIVNNQTTMTQINFN-ASYTSAPTPSRASFDNGYSEFCDKQ 374 WRR N+Q+ +T+ FN A + N Y FCD+Q Sbjct: 34 WRRNFRNSQSVVTKTWFNVAGFVQPDVIVSLLNGNDYDGFCDRQ 77 >SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0) Length = 683 Score = 29.1 bits (62), Expect = 4.2 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Frame = +3 Query: 249 RRTIVNNQTTMTQINFNASYTSAPTPSR--ASFDNGYSEFCDKQQPNDYLNYYNNPTPDG 422 RRT TQ ++ S+ + S+ A DNG C ++ D + + PTP G Sbjct: 549 RRTRKTTPQPTTQY-YSTSHDPMTSQSKKTACGDNG----CTTEETMDTMGFIIPPTPTG 603 Query: 423 ADTVVSDSETAAAS 464 V SD AAS Sbjct: 604 GHNVTSDKPVMAAS 617 >SB_34917| Best HMM Match : zf-C2H2 (HMM E-Value=3.9e-37) Length = 288 Score = 29.1 bits (62), Expect = 4.2 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -2 Query: 125 TSFYTCEPHTRCPCDRTR*ACSWPSPSRIRDL 30 TS+ HT C D T +C W + IRD+ Sbjct: 19 TSYKLDTTHTSCKLDTTHTSCKWDTTRCIRDI 50 >SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 320 Score = 29.1 bits (62), Expect = 4.2 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Frame = +3 Query: 249 RRTIVNNQTTMTQINFNASYTSAPTPSR--ASFDNGYSEFCDKQQPNDYLNYYNNPTPDG 422 RRT TQ ++ S+ + S+ A DNG C ++ D + + PTP G Sbjct: 186 RRTRKTTPQPTTQY-YSTSHDPMTSQSKKTACGDNG----CTTEETMDTMGFIIPPTPTG 240 Query: 423 ADTVVSDSETAAAS 464 V SD AAS Sbjct: 241 GHNVTSDKPVMAAS 254 >SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 460 Score = 28.3 bits (60), Expect = 7.3 Identities = 16/56 (28%), Positives = 25/56 (44%) Frame = +3 Query: 342 DNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDI 509 DN ++ D ND +N N+ D D ++D N + N + DDND+ Sbjct: 52 DNDMNDDNDMNDDND-MNDDNDMNDDNDDNDMNDDNDMNDDNDMNDDNDMNDDNDM 106 >SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06) Length = 624 Score = 28.3 bits (60), Expect = 7.3 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -1 Query: 681 FSSSCRWLVHTNRLLKRFRIISRTG 607 F S RWL+ NRL + +++SR G Sbjct: 190 FPESARWLIANNRLDEALQVLSRYG 214 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,059,965 Number of Sequences: 59808 Number of extensions: 504606 Number of successful extensions: 1594 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1472 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1594 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2107953584 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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