Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120024.Seq
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0130 + 41262652-41262798,41262958-41263056,41263155-412632... 80 2e-15
01_07_0129 + 41243686-41243853,41243936-41244053,41245485-412455... 75 8e-14
12_02_1237 + 27245411-27245842 32 0.58
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 32 0.58
04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178 31 1.3
05_02_0134 + 6954760-6955434 30 2.4
09_02_0229 - 6062825-6064899,6064943-6065432,6065479-6065956,606... 29 4.1
02_05_0388 + 28541751-28541820,28541912-28542054,28542199-285422... 28 7.2
02_01_0314 + 2106976-2107658,2107792-2107931,2108367-2108636,210... 28 9.5
>01_07_0130 +
41262652-41262798,41262958-41263056,41263155-41263220,
41264073-41264255
Length = 164
Score = 79.8 bits (188), Expect = 2e-15
Identities = 37/68 (54%), Positives = 46/68 (67%)
Frame = +3
Query: 561 ALVSTLRNPGQYKSVSAFAAICNPSACPWGVKAFSGYLGEDKSKWAEWDATELVKKYNGP 740
AL L+N +YKSVSAF+ + NP CPWG KAFS YLG KS W E+DAT L+KK N
Sbjct: 37 ALTIYLKNTDKYKSVSAFSPVVNPINCPWGQKAFSNYLGPAKSDWKEYDATCLIKKCNKI 96
Query: 741 PLTLLLDR 764
+L+D+
Sbjct: 97 STPILIDQ 104
>01_07_0129 +
41243686-41243853,41243936-41244053,41245485-41245532,
41245756-41245787
Length = 121
Score = 74.5 bits (175), Expect = 8e-14
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +1
Query: 256 TCSEQNFITKSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGV 396
TC+++NF+TK+G QR AA HG+ +V PDTSPRG+ I+G+ SWDFGV
Sbjct: 65 TCNDENFVTKAGAQRAAAAHGIALVAPDTSPRGLNIEGEADSWDFGV 111
Score = 48.0 bits (109), Expect = 8e-06
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +2
Query: 92 SLQLESSNKIFGGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSG 253
+L+ S K+FGG+ + H S+ L C M FS++LPP LP+LY+LSG
Sbjct: 13 ALEQMSRTKMFGGHNLRFRHHSATLGCPMTFSVFLPPSPAS---DLPVLYWLSG 63
>12_02_1237 + 27245411-27245842
Length = 143
Score = 31.9 bits (69), Expect = 0.58
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 379 SWDFGVSAGFYLDATNEPWNNN 444
++DFG+ AGF++ TN P+N +
Sbjct: 42 AYDFGIPAGFFVPGTNNPYNGD 63
>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 31.9 bits (69), Expect = 0.58
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 379 SWDFGVSAGFYLDATNEPWNNNYRMGSYLN 468
SW +G+ G Y + N PW +N +++N
Sbjct: 1287 SWQYGLDQGLYSEGKNYPWFSNGSSNAFIN 1316
>04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178
Length = 455
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 654 KAFSGYLGEDKSKWAEWDATELVKKYNGPPLTLLL 758
K F ++ KW+E+D+ +K NG P+ LLL
Sbjct: 180 KRFDSFMLSHGFKWSEFDSCVYIKFVNGSPIYLLL 214
>05_02_0134 + 6954760-6955434
Length = 224
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 536 GTQH-GRAWCFSFYSEESWPVQVSKR 610
G QH G+AWC F S+ WP S R
Sbjct: 199 GNQHWGKAWCPQFASQFGWPSLTSGR 224
>09_02_0229 - 6062825-6064899,6064943-6065432,6065479-6065956,
6066333-6066382,6068917-6069172,6069358-6069503
Length = 1164
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +2
Query: 242 YLSGQLVVNKTSSLNLVSRGMQPNMV*LS*VLILRHVE----LRLMEM 373
YL QLV+ K+S + ++S N + ++ V L+H+E LR ME+
Sbjct: 1036 YLHNQLVIEKSSGVEIISNLPALNKLVITDVHALKHIEHLPSLRYMEL 1083
>02_05_0388 +
28541751-28541820,28541912-28542054,28542199-28542248,
28543087-28543210,28543765-28543770
Length = 130
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 131 NHQKFYWTILIASCPCLISDELRKNYIHNYLV 36
NHQ+ +W L +SC C S L + Y+V
Sbjct: 75 NHQRPWWIALPSSCWCFFSKTLAEREAFYYVV 106
>02_01_0314 +
2106976-2107658,2107792-2107931,2108367-2108636,
2109938-2110254
Length = 469
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 376 SSWDFGVSAGFYLDATNEPWN 438
SSWD V GF AT PW+
Sbjct: 297 SSWDNPVPGGFKFTATKAPWS 317
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,939,175
Number of Sequences: 37544
Number of extensions: 465266
Number of successful extensions: 1005
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -