Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120021.Seq
(683 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase prot... 23 3.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.7
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 22 4.7
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 6.3
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 22 6.3
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 1.6
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 370 VFLRLEAPNVLAIR-TLQLSFSKFTKASVSNSRLSILTIDGLSTEHNTPPRFL*TKWV 540
VFL L A + + + L S F + +LT+ L+ H TP R++ W+
Sbjct: 306 VFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLNFHHRTPDRYVMPSWI 363
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 2.1
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 472 ILTIDGLSTEHNTPPRFL*TKWV 540
+LT+ L+ H TP R++ W+
Sbjct: 341 VLTVLVLNFHHRTPDRYVMPSWI 363
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 370 VFLRLEAPNVLAIR-TLQLSFSKFTKASVSNSRLSILTIDGLSTEHNTPPRFL*TKWV 540
VFL L A + + + L S F + +LT+ L H TP R++ W+
Sbjct: 238 VFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVMPSWI 295
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 370 VFLRLEAPNVLAIR-TLQLSFSKFTKASVSNSRLSILTIDGLSTEHNTPPRFL*TKWV 540
VFL L A + + + L S F + +LT+ L H TP R++ W+
Sbjct: 238 VFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVMPSWI 295
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 370 VFLRLEAPNVLAIR-TLQLSFSKFTKASVSNSRLSILTIDGLSTEHNTPPRFL*TKWV 540
VFL L A + + + L S F + +LT+ L H TP R++ W+
Sbjct: 238 VFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVMPSWI 295
>AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase
protein.
Length = 693
Score = 22.6 bits (46), Expect = 3.6
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = +3
Query: 513 PSFSVNKMGSPGMLVSLVSVTTN 581
P ++V ++ PG+ ++ + +TTN
Sbjct: 420 PQYTVQQLDFPGIEIADIKLTTN 442
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 472 ILTIDGLSTEHNTPPRFL*TKWV 540
+LT+ L H TP R++ W+
Sbjct: 273 VLTVLVLIFHHRTPDRYVMPSWI 295
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 472 ILTIDGLSTEHNTPPRFL*TKWV 540
+LT+ L H TP R++ W+
Sbjct: 273 VLTVLVLIFHHRTPDRYVMPSWI 295
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 472 ILTIDGLSTEHNTPPRFL*TKWV 540
+LT+ L H TP R++ W+
Sbjct: 273 VLTVLVLIFHHRTPDRYVMPSWI 295
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 22.2 bits (45), Expect = 4.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 338 QPDYDMDLSDFSITEVEATQYLTLLLIV 255
QP D+SD+ + LT+ LIV
Sbjct: 363 QPSEGEDISDYKFRHITEITILTVQLIV 390
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.8 bits (44), Expect = 6.3
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 631 IHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVCCAPSTDRLS 479
+ + + +T K+EFVV + P P +F V CA +L+
Sbjct: 387 LETEWSSFINPWTKKLEFVVGQHRILKGPANPDIFR----VSCATEHSQLT 433
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 21.8 bits (44), Expect = 6.3
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 631 IHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVCCAPSTDRLS 479
+ + + +T K+EFVV + P P +F V CA +L+
Sbjct: 93 LETEWSSFINPWTKKLEFVVGQHRILKGPANPDIFR----VSCATEHSQLT 139
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,974
Number of Sequences: 438
Number of extensions: 3042
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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