Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120019.Seq
(804 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77654-2|CAB01130.1| 308|Caenorhabditis elegans Hypothetical pr... 31 0.97
U72208-1|AAD00182.1| 308|Caenorhabditis elegans inhibitor of ap... 31 0.97
U41296-1|AAA93297.1| 579|Caenorhabditis elegans Steroid hormone... 30 2.2
AY204170-1|AAO39174.1| 579|Caenorhabditis elegans nuclear recep... 30 2.2
AF067936-1|AAC19212.2| 579|Caenorhabditis elegans Nuclear hormo... 30 2.2
Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z74045-2|CAA98553.1| 155|Caenorhabditis elegans Hypothetical pr... 29 2.9
U85911-1|AAB94330.1| 155|Caenorhabditis elegans inhibitor of ap... 29 2.9
AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal t... 29 2.9
AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal t... 29 2.9
Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical pr... 29 5.1
U29097-10|AAA68414.1| 348|Caenorhabditis elegans Serpentine rec... 28 6.8
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z29094-16|CAA82345.2| 184|Caenorhabditis elegans Hypothetical p... 28 9.0
AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein ... 28 9.0
>Z77654-2|CAB01130.1| 308|Caenorhabditis elegans Hypothetical
protein C50B8.2 protein.
Length = 308
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 548 IAEAGLFYTGRGDETVCFFCDCCVRDWHINE--DAWQRHATENPQCYFVL 691
+A AG + T + C C+ + + + D W++H + +P C FV+
Sbjct: 49 LARAGFYSTASPEFPASAKCPFCMLEINFEQCDDPWEKHKSGSPHCEFVM 98
>U72208-1|AAD00182.1| 308|Caenorhabditis elegans inhibitor of
apoptosis homolog protein.
Length = 308
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 548 IAEAGLFYTGRGDETVCFFCDCCVRDWHINE--DAWQRHATENPQCYFVL 691
+A AG + T + C C+ + + + D W++H + +P C FV+
Sbjct: 49 LARAGFYSTASPEFPASAKCPFCMLEINFEQCDDPWEKHKSGSPHCEFVM 98
>U41296-1|AAA93297.1| 579|Caenorhabditis elegans Steroid hormone
receptor-like proteinprotein.
Length = 579
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -3
Query: 664 GGVSLPGVFVNMPITYATIAKETYSFVSATRVKKSRFRNVRNHVTQC-GRPKITNVSIRD 488
G + LP + N+P YA+ + Y +A KS N C GRP N++ R
Sbjct: 349 GMIQLPTEYGNLPADYASWIPQDYGHPTAGHEGKSDMHNFFEARDFCVGRPSSCNLNERS 408
Query: 487 CK 482
K
Sbjct: 409 MK 410
>AY204170-1|AAO39174.1| 579|Caenorhabditis elegans nuclear receptor
NHR-47 protein.
Length = 579
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -3
Query: 664 GGVSLPGVFVNMPITYATIAKETYSFVSATRVKKSRFRNVRNHVTQC-GRPKITNVSIRD 488
G + LP + N+P YA+ + Y +A KS N C GRP N++ R
Sbjct: 349 GMIQLPTEYGNLPADYASWIPQDYGHPTAGHEGKSDMHNFFEARDFCVGRPSSCNLNERS 408
Query: 487 CK 482
K
Sbjct: 409 MK 410
>AF067936-1|AAC19212.2| 579|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 47 protein.
Length = 579
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -3
Query: 664 GGVSLPGVFVNMPITYATIAKETYSFVSATRVKKSRFRNVRNHVTQC-GRPKITNVSIRD 488
G + LP + N+P YA+ + Y +A KS N C GRP N++ R
Sbjct: 349 GMIQLPTEYGNLPADYASWIPQDYGHPTAGHEGKSDMHNFFEARDFCVGRPSSCNLNERS 408
Query: 487 CK 482
K
Sbjct: 409 MK 410
>Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical
protein W09D6.6 protein.
Length = 801
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = -2
Query: 350 VCIFNTLVFGPIFYFCFTILAHNVIVDLIVFKPLTIKLLINAVFTMG*FSNEPCLSSNMS 171
+C ++ IFYFCFT H L+ F + I ++ + + N+P +++
Sbjct: 76 ICTIFAVICQSIFYFCFTFYFHPYTHLLLAFCVSKLFFWILSLCSFSKWRNQPSTPISLA 135
Query: 170 NTCSAML 150
SA L
Sbjct: 136 FAFSAAL 142
>Z74045-2|CAA98553.1| 155|Caenorhabditis elegans Hypothetical
protein T27F2.3 protein.
Length = 155
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 548 IAEAGLFYTGRGDETVCFFCDCCVRDWHINEDAWQRHATENPQCYFV 688
+A+AG + TG C FC+ + D+ +D W H + C FV
Sbjct: 42 VAQAGFYCTGP-QSGKCAFCNKEL-DFDPEDDPWYEHTKRDEPCEFV 86
>U85911-1|AAB94330.1| 155|Caenorhabditis elegans inhibitor of
apoptosis homolog protein.
Length = 155
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 548 IAEAGLFYTGRGDETVCFFCDCCVRDWHINEDAWQRHATENPQCYFV 688
+A+AG + TG C FC+ + D+ +D W H + C FV
Sbjct: 42 VAQAGFYCTGP-QSGKCAFCNKEL-DFDPEDDPWYEHTKRDEPCEFV 86
>AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = -2
Query: 350 VCIFNTLVFGPIFYFCFTILAHNVIVDLIVFKPLTIKLLINAVFTMG*FSNEPCLSSNMS 171
+C ++ IFYFCFT H L+ F + I ++ + + N+P +++
Sbjct: 76 ICTIFAVICQSIFYFCFTFYFHPYTHLLLAFCVSKLFFWILSLCSFSKWRNQPSTPISLA 135
Query: 170 NTCSAML 150
SA L
Sbjct: 136 FAFSAAL 142
>AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = -2
Query: 350 VCIFNTLVFGPIFYFCFTILAHNVIVDLIVFKPLTIKLLINAVFTMG*FSNEPCLSSNMS 171
+C ++ IFYFCFT H L+ F + I ++ + + N+P +++
Sbjct: 76 ICTIFAVICQSIFYFCFTFYFHPYTHLLLAFCVSKLFFWILSLCSFSKWRNQPSTPISLA 135
Query: 170 NTCSAML 150
SA L
Sbjct: 136 FAFSAAL 142
>Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical protein
C35A5.8 protein.
Length = 1078
Score = 28.7 bits (61), Expect = 5.1
Identities = 27/127 (21%), Positives = 49/127 (38%)
Frame = -3
Query: 673 RVFGGVSLPGVFVNMPITYATIAKETYSFVSATRVKKSRFRNVRNHVTQCGRPKITNVSI 494
R++G L + +I ++ F S T++ ++ + N+ HV Q P +TN+S+
Sbjct: 842 RLYGDSCLQDALTTFVKLFTSIPQD--DFHSYTKIAQNHY-NLLEHVVQDNMPFVTNLSV 898
Query: 493 RDCKLDMHLYTHLGLPSFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAYSIHSSSDQF 314
D + H GL S + + S D+ L T + D
Sbjct: 899 -DVFCALLRSIHSGLSSVDAIVITSACSSLDTILNYLYRRLTRSTPPTNKVGMDPEGDNI 957
Query: 313 FISASQY 293
I+ Q+
Sbjct: 958 LIAIKQH 964
>U29097-10|AAA68414.1| 348|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 29 protein.
Length = 348
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 335 TLVFGPIFYFCFTILAHNVIVDLIVFKPLTIKLLINAVFTMG*FSNEPCLSSNMSNTC 162
TL + +F FC L + IV+ I + ++ + V+ + +SN PC S+ C
Sbjct: 46 TLWYKNVFPFCTKNLLLSAIVNGIFHQSTVAEIRLKTVYHLIRYSNAPCSILFQSSDC 103
>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical
protein K12D12.1 protein.
Length = 1520
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/53 (20%), Positives = 24/53 (45%)
Frame = +2
Query: 500 YVCNFWPAALRDMITNIAEAGLFYTGRGDETVCFFCDCCVRDWHINEDAWQRH 658
++ +FWP+ ++ + +G E V F+ +W +N D W+ +
Sbjct: 591 FIHHFWPSLIQRNFVEEFITPIVKATKGKEEVSFYSLPEYSEWRMNTDNWKSY 643
>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical
protein K12D12.1 protein.
Length = 1520
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/53 (20%), Positives = 24/53 (45%)
Frame = +2
Query: 500 YVCNFWPAALRDMITNIAEAGLFYTGRGDETVCFFCDCCVRDWHINEDAWQRH 658
++ +FWP+ ++ + +G E V F+ +W +N D W+ +
Sbjct: 591 FIHHFWPSLIQRNFVEEFITPIVKATKGKEEVSFYSLPEYSEWRMNTDNWKSY 643
>Z29094-16|CAA82345.2| 184|Caenorhabditis elegans Hypothetical
protein C07A9.9 protein.
Length = 184
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +3
Query: 258 KYNQVDDHVV----CEYCEAEIKNWSEDECIEYAHVTLSPYCAY 377
+Y VDD V C +C W D+C + H +L +C Y
Sbjct: 59 EYQYVDDDVPNSERCHFCMKRKGRWMGDDCSD--HSSLCKHCCY 100
>AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein
protein.
Length = 801
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = -2
Query: 350 VCIFNTLVFGPIFYFCFTILAHNVIVDLIVFKPLTIKLLINAVFTMG*FSNEPCLSSNMS 171
+C ++ IFYFCFT H L+ F + I ++ + + N+P +++
Sbjct: 76 ICTIFAVICQSIFYFCFTFYFHPYTHLLLAFCVSKLFFWILSLCSFLKWRNQPSTPISLA 135
Query: 170 NTCSAML 150
SA L
Sbjct: 136 FAFSAAL 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,655,992
Number of Sequences: 27780
Number of extensions: 386599
Number of successful extensions: 1245
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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