Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120019.Seq
         (804 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02350.1 68418.m00158 DC1 domain-containing protein contains ...    32   0.39 
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ...    28   6.3  
At4g09640.1 68417.m01584 expressed protein several hypothetical ...    28   6.3  
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ...    28   6.3  
At3g23870.1 68416.m03000 permease-related low similarity to puri...    28   6.3  
At3g01100.1 68416.m00015 early-responsive to dehydration protein...    28   6.3  
At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase, ...    28   6.3  
At1g34470.1 68414.m04283 permease-related low similarity to puri...    28   6.3  
At1g71900.1 68414.m08312 expressed protein                             28   8.3  
At1g55930.1 68414.m06415 CBS domain-containing protein / transpo...    28   8.3  

>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +3

Query: 213 HCKHGVNQQLDR*RFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIA 392
           H  HG + +L+  R      D++++C+ C   I   +   C++     L   CA A++  
Sbjct: 372 HFSHGHHLKLENSRV----YDENIICQACILPIYEGNYYSCMDQCDFVLHEACANASRKK 427

Query: 393 EHESFGDNITI 425
           +H   G  +T+
Sbjct: 428 DHALHGHPLTL 438


>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 273 DDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVL-VKEG 449
           +++++C+ C   I   +   C++  +  L   CA A++  +H      +T+  V  ++  
Sbjct: 388 NENIICQACILPIYEGNYYSCMDQCNFILHEACANASRKKDHALHSHPLTLKVVSDIQNE 447

Query: 450 RPKCVYRC 473
             K  +RC
Sbjct: 448 YFKGYFRC 455


>At4g09640.1 68417.m01584 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 386

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 341 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 255
           FNT V  PI+Y  FT L   ++  +I+FK
Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFK 277


>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 681

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/67 (25%), Positives = 27/67 (40%)
 Frame = +3

Query: 273 DDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVLVKEGR 452
           D++  C  C   I       C+E   + L   CA A ++  H      +T+N    + G 
Sbjct: 371 DENKYCRGCSFPIYEGQFYSCMECDFI-LHESCANAPRMKRHPLHPHPLTLNVATKELGN 429

Query: 453 PKCVYRC 473
            + VY C
Sbjct: 430 NEGVYHC 436


>At3g23870.1 68416.m03000 permease-related low similarity to purine
           permease [Arabidopsis thaliana] GI:7620007; contains 9
           predicted transmembrane domains; contains Pfam PF05653:
           Protein of unknown function (DUF803); identified as
           COG0697, Permeases of the drug/metabolite transporter
           (DMT) superfamily
          Length = 335

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 341 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 255
           FNT V  P++Y  FT     +I  +I+FK
Sbjct: 240 FNTAVISPVYYVMFT--TFTIIASMIMFK 266


>At3g01100.1 68416.m00015 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 703

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 730 SNCVLTKLFTFHRQYKITLRVFGGVSLPGVFVNMPITY 617
           SN  L  L  F R +  ++RVF   S+ G+F+ +P+ Y
Sbjct: 79  SNLGLDAL-VFIRVFVFSIRVFSFASVVGIFILLPVNY 115


>At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase,
           putative similar to pathogen-inducible alpha-dioxygenase
           [Nicotiana attenuata] GI:12539609; contains Pfam profile
           PF03098: Animal haem peroxidase
          Length = 631

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = +1

Query: 154 IAEH--VFDMLLERHGSFENYPIVNTA-LINSLIVNGLNTIKSTITL 285
           + EH  V DML ER+  F++  +  TA L+ + ++  ++TI  TI L
Sbjct: 272 VKEHNSVCDMLKERYPDFDDEKLYRTARLVTAAVIAKVHTIDWTIEL 318


>At1g34470.1 68414.m04283 permease-related low similarity to purine
           permease [Arabidopsis thaliana] GI:7620007
          Length = 368

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 341 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 255
           FNT V  PI+Y  FT L   ++  +I+FK
Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFK 277


>At1g71900.1 68414.m08312 expressed protein
          Length = 343

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 341 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 255
           FNT +  PI+Y  FT L   ++  +I+FK
Sbjct: 251 FNTAIVSPIYYVMFTSL--TILASVIMFK 277


>At1g55930.1 68414.m06415 CBS domain-containing protein /
           transporter associated domain-containing protein
           contains Pfam profiles PF00571: CBS domain, PF03471:
           Transporter associated domain, PF01595: Domain of
           unknown function
          Length = 653

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -2

Query: 377 IRAIRRQGYVCIFNTLVFGPIFYFCFTILAHNVIVDLIVFKPLTIKLLINA 225
           IR + ++G V     +V G +FY C  +LA   +VD+   K  +I LL NA
Sbjct: 96  IRILLKRGIV--LGAVVCGVLFYGCGKVLASTSVVDVAFSK--SILLLKNA 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,152,306
Number of Sequences: 28952
Number of extensions: 338453
Number of successful extensions: 869
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)