Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120018.Seq
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 62 9e-11
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 62 9e-11
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 55 1e-08
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 54 3e-08
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 52 9e-08
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 49 9e-07
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 48 2e-06
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 47 4e-06
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 42 1e-04
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 42 1e-04
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 39 7e-04
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 38 0.002
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 38 0.002
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 37 0.003
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 36 0.007
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 36 0.007
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 33 0.035
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 33 0.047
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 28 1.3
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 7.1
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr... 26 7.1
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 26 7.1
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 26 7.1
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 25 9.4
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 9.4
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 62.1 bits (144), Expect = 9e-11
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +1
Query: 490 QVQTSAHLVDDILNTSD-DKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILA 666
+++ + + V +I+ DKI++ SQ+V +L++F F+Q+ I LMYTG L +R
Sbjct: 866 KIEKALNAVKEIIKKQPTDKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAER--N 923
Query: 667 ETTFNNAADTQHRILLLSIKCGGVGLNLIGGN 762
+ N D R+LL+S+K G VGLNL N
Sbjct: 924 QALINFEVDPNVRVLLISLKAGNVGLNLTCAN 955
Score = 47.2 bits (107), Expect = 3e-06
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 11/77 (14%)
Frame = +3
Query: 6 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNK-------NNDSTN--- 155
L +T RWC++GTP+ N + YS+I FL+ +P++D W +K +N +T+
Sbjct: 558 LESTYRWCLSGTPMQNGVEEFYSLIKFLRIKPYSD---WSSFSKDFTIPLSSNINTSAPM 614
Query: 156 -RIKSIIKKIVLKRDKS 203
R + ++K ++L+R K+
Sbjct: 615 KRFRGLLKAVLLRRTKN 631
Score = 35.9 bits (79), Expect = 0.007
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +2
Query: 377 VLWLILKLRQICCHPYLAMHGRNLLETNDCFK 472
+L L+L+LRQ CCHP+L + ++ ND F+
Sbjct: 689 LLVLLLRLRQACCHPWLIVAREAAVDDNDSFQ 720
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 102 FNDPRVWKMLNKNNDSTNRIKSIIKK 179
F DP+ W K + N +K IIKK
Sbjct: 855 FTDPKHWTTSTKIEKALNAVKEIIKK 880
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 62.1 bits (144), Expect = 9e-11
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Frame = +3
Query: 3 ALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWK-------MLNKNNDSTNRI 161
AL NRWC+TGTP+ N ++YS++ FL PFND VWK + N R+
Sbjct: 402 ALQGINRWCLTGTPLQNNVDELYSLVKFLHINPFNDQSVWKDQISLPLCQGEENLVFKRL 461
Query: 162 KSIIKKIVLKRDKSEISFNIPK 227
+ ++ I+L+R K+ + N K
Sbjct: 462 RMLLSVIMLRRTKTLLEANAGK 483
Score = 39.9 bits (89), Expect = 4e-04
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +1
Query: 544 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 723
K I+ SQ+ +L I + ++ I + Y G++ R + + + TQ +LL S+
Sbjct: 672 KTIIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRSDSGTQ--VLLCSL 729
Query: 724 KCGGVGLNL 750
KCG +GLNL
Sbjct: 730 KCGALGLNL 738
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +2
Query: 248 C*FNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHP 421
C F E E+ Y L E V N+ + ++L L+L+LRQ C HP
Sbjct: 502 CKFEESERDFYSNLARNMERTMSNFV------NSGKLGKNYTNILCLLLRLRQACNHP 553
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 55.2 bits (127), Expect = 1e-08
Identities = 30/82 (36%), Positives = 42/82 (51%)
Frame = +1
Query: 523 ILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQH 702
I +DDKI+L+S + L +FE + + L G + V R TFN+ +
Sbjct: 622 IKQETDDKIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQRLVDTFND-PEKDA 680
Query: 703 RILLLSIKCGGVGLNLIGGNTL 768
+ LLS K GG G+NLIG N L
Sbjct: 681 FVFLLSSKAGGCGINLIGANRL 702
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 53.6 bits (123), Expect = 3e-08
Identities = 30/81 (37%), Positives = 48/81 (59%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L T +I+L SQ+++ L I E++F+ KNIA + G +R A +F NA +++
Sbjct: 883 LITRGHRILLFSQFIQQLDILEDWFEYKNIAYARFDGASSEMERQSAIDSF-NAPNSELS 941
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
LLS + GGVG+NL +T+
Sbjct: 942 CFLLSTRAGGVGINLASADTV 962
Score = 36.7 bits (81), Expect = 0.004
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 30 ITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLN-KNNDSTNRIKSIIKKIVLKRDKSE 206
+TGTP+ N ++++++ FL N + K + + + + I+K L+R KSE
Sbjct: 716 LTGTPLQNNVRELFNLLQFLNPMKINAAELEKRYSIIDTEKVTELHQILKPFFLRRVKSE 775
Query: 207 ISFNIP 224
+ N P
Sbjct: 776 VLDNFP 781
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 52.0 bits (119), Expect = 9e-08
Identities = 29/89 (32%), Positives = 49/89 (55%)
Frame = +1
Query: 496 QTSAHLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETT 675
Q ++D I + ++KI++ SQ+ +YL + + K +NI + Y G + R + +
Sbjct: 727 QARQTILDIIGSKRNEKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQRQKSLHS 786
Query: 676 FNNAADTQHRILLLSIKCGGVGLNLIGGN 762
FNN D ++L+S+K G VGLNL N
Sbjct: 787 FNNDKDV--LVMLVSLKAGSVGLNLTIAN 813
Score = 43.6 bits (98), Expect = 3e-05
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 18/107 (16%)
Frame = +3
Query: 6 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKN-------------ND 146
L A RWC++GTPI N + YS++ FL+ +P+ VW + K+
Sbjct: 416 LDAKYRWCLSGTPIQNHIDEFYSLLKFLRIKPYC---VWSLFAKDISRPLKSYRADIVEA 472
Query: 147 STNRIKSIIKKIVLKRDK-SEIS----FNIPKHTVEYVHVNLMKKKK 272
+ R++ ++ V +R K + ++ N+P T+ V VNL+ +++
Sbjct: 473 ALKRLRILLASTVFRRTKETRVNNLPIVNLPPKTIRTVSVNLLPEER 519
Score = 29.1 bits (62), Expect = 0.76
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 359 LQQMQHVLWLILKLRQICCHPYL 427
L + +L +L+LRQ CCHP+L
Sbjct: 543 LSRYGFLLVSLLRLRQFCCHPWL 565
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 48.8 bits (111), Expect = 9e-07
Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 7/73 (9%)
Frame = +3
Query: 3 ALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWK----MLNKNND---STNRI 161
++++ NRW ITGTPI NK D+YS+I F++ P+ + W+ + ++ D + N +
Sbjct: 674 SISSQNRWVITGTPIVNKLDDLYSLIKFMRYEPWCNYTYWQTFVSLPYQSKDVLKALNVV 733
Query: 162 KSIIKKIVLKRDK 200
+SI++ +VL+R K
Sbjct: 734 QSILEFLVLRRTK 746
Score = 47.2 bits (107), Expect = 3e-06
Identities = 23/78 (29%), Positives = 42/78 (53%)
Frame = +1
Query: 529 NTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRI 708
++ +K+++ SQ+ +L I + + + + + G + + R A TF N D +
Sbjct: 978 SSEPEKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMSQQMRSTALETFRNDPDVN--V 1035
Query: 709 LLLSIKCGGVGLNLIGGN 762
L++S+K GGVGLNL N
Sbjct: 1036 LIISLKAGGVGLNLTCAN 1053
Score = 33.9 bits (74), Expect = 0.027
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = +2
Query: 254 FNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYLAM 433
F++ E+ +YD L +++ + A TL R +L L+L+LRQ CC P L
Sbjct: 771 FSDSERKIYDSLYTKAKSTVNANIVA----GTLFR--NYTTILGLLLRLRQACCDPVLLS 824
Query: 434 HGRNLLETNDCFK 472
+ ET D F+
Sbjct: 825 NMTINSETFDDFE 837
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 48.0 bits (109), Expect = 2e-06
Identities = 26/75 (34%), Positives = 38/75 (50%)
Frame = +1
Query: 544 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 723
K ++VSQ+ E L++ E F ++ G +R L FN ++ + +LLLS
Sbjct: 550 KAVIVSQYKETLELIELFLSILHVRFCKLLGSTPFSERDLIVHNFNTSSFKEFSVLLLSS 609
Query: 724 KCGGVGLNLIGGNTL 768
K GG GLNL G L
Sbjct: 610 KAGGCGLNLTGSTRL 624
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 6 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWK 125
L R +TGTP+ N + +SM+NF+ P +K
Sbjct: 361 LKTRKRLLLTGTPLQNDLSEYFSMVNFIIPGSLGTPNSFK 400
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 46.8 bits (106), Expect = 4e-06
Identities = 26/93 (27%), Positives = 48/93 (51%)
Frame = +1
Query: 490 QVQTSAHLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAE 669
++Q L+ D+++ ++++ +Q + L I E F L G K+E R +
Sbjct: 992 KLQVLDRLLKDLVSNGH-RVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQILT 1050
Query: 670 TTFNNAADTQHRILLLSIKCGGVGLNLIGGNTL 768
FNN D + + +LS + GG+G+NL G +T+
Sbjct: 1051 ERFNN--DDKIPVFILSTRSGGLGINLTGADTV 1081
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 12 ATNRWCITGTPIHNKHWDMYSMINFL 89
A +R +TGTP+ N +++S++ FL
Sbjct: 596 AEHRLLLTGTPLQNNLVELWSLLYFL 621
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 41.9 bits (94), Expect = 1e-04
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +1
Query: 544 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 723
K ++ Q + + I E++ + KN L G K +DR FN+ + I +LS
Sbjct: 1205 KTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFNDPKSDVY-IFMLST 1263
Query: 724 KCGGVGLNLIGGNTL 768
+ GG+GLNL +T+
Sbjct: 1264 RAGGLGLNLQTADTV 1278
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 21 RWCITGTPIHNKHWDMYSMINFLQCRPFN 107
R +TGTP+ N ++++++NF+ + FN
Sbjct: 1021 RLILTGTPLQNNLPELWALLNFVLPKIFN 1049
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 41.9 bits (94), Expect = 1e-04
Identities = 25/74 (33%), Positives = 37/74 (50%)
Frame = +1
Query: 541 DKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLS 720
D+++L SQ+ + L I + K N+ L + G +V+ R F AD + LLS
Sbjct: 778 DRVVLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLIDQFY--ADESINVFLLS 835
Query: 721 IKCGGVGLNLIGGN 762
K GG G+NL N
Sbjct: 836 TKAGGFGINLACAN 849
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 39.1 bits (87), Expect = 7e-04
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +1
Query: 535 SDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILL 714
S +I++ Q + + I E++ + L G K +DR FN+ + + L
Sbjct: 751 SGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFNDPT-AEVNLFL 809
Query: 715 LSIKCGGVGLNLIGGNTL 768
LS + GG+GLNL +T+
Sbjct: 810 LSTRAGGLGLNLQTADTV 827
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 21 RWCITGTPIHNKHWDMYSMINFLQCRPFN 107
R +TGTP+ N ++++++NF+ R FN
Sbjct: 569 RLILTGTPLQNNLPELWALLNFVLPRIFN 597
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +1
Query: 538 DDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLL 717
+++I++ SQ+ + L I E ++ L G VE R F+ + +++ LL
Sbjct: 780 NERILIFSQFTQVLDILEYVLNTLDLEFLRLDGSTPVETRQQLIDDFHT--NENYKVFLL 837
Query: 718 SIKCGGVGLNLIGGN 762
S K GG G+NL N
Sbjct: 838 STKSGGFGINLTCAN 852
Score = 28.7 bits (61), Expect = 1.0
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Frame = +3
Query: 6 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPR-----VWKMLNKNN--------- 143
+ A R ITGTP+ N ++ S++ F+ + F++ ++K+ ++
Sbjct: 562 IPANFRLLITGTPLQNNLKELISLLAFMLPKVFDNNMQGLDIIYKIKTTSDGDIERAYLS 621
Query: 144 -DSTNRIKSIIKKIVLKRDKSEISFNIPK--HTVEYVHV 251
+ +R K+I+ +L+R K + ++P VEY H+
Sbjct: 622 QERISRAKTIMNPFILRRRKENVLSDLPPKIQHVEYCHM 660
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 37.5 bits (83), Expect = 0.002
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +1
Query: 535 SDDKIILVSQWVEYLKIFENFFKQKNIATLMYT---GQLKVEDRILAETTFNNAADTQHR 705
S+ ++++ Q + L + E Q + + Y G ++ R A T FNN D
Sbjct: 1735 SEHRVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNN--DPSID 1792
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
+LLL+ GG+GLNL G +T+
Sbjct: 1793 VLLLTTHVGGLGLNLTGADTV 1813
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 37.1 bits (82), Expect = 0.003
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = +1
Query: 544 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 723
+I+L SQ+ + L I E I+ + G +VE R F+ D + LLS
Sbjct: 942 RILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVRQDIIDQFHKEEDVT--VFLLST 999
Query: 724 KCGGVGLNLIGGNTL 768
K GG G+NL N +
Sbjct: 1000 KAGGFGINLACANVV 1014
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 35.9 bits (79), Expect = 0.007
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +3
Query: 18 NRWCITGTPIHNKHWDMYSMINFLQCRPF--NDPRVWKMLNKNNDSTNR-IKSIIKKIVL 188
NR ITGTP+ N ++ S++NFL F D + N + R ++ ++ +L
Sbjct: 547 NRLLITGTPLQNNLKELASLVNFLMPGKFYIRDELNFDQPNAEQERDIRDLQERLQPFIL 606
Query: 189 KRDKSEISFNIPKHTVEYVHVNL 257
+R K ++ ++P + + V L
Sbjct: 607 RRLKKDVEKSLPSKSERILRVEL 629
Score = 33.9 bits (74), Expect = 0.027
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +1
Query: 544 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 723
++++ SQ V L I + + G + R ++ FN A D+ + LLS
Sbjct: 722 RVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFN-APDSPDFVFLLST 780
Query: 724 KCGGVGLNLIGGNTL 768
+ GG+G+NL +T+
Sbjct: 781 RAGGLGINLNTADTV 795
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 35.9 bits (79), Expect = 0.007
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 6 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPF 104
L T + C++GTP+ N+ +++S++ FL+ PF
Sbjct: 514 LRTTRKICLSGTPLQNRIGELFSLLRFLRADPF 546
Score = 29.5 bits (63), Expect = 0.57
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +1
Query: 544 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 723
K I+ SQ+ L + ++ + G + + R F+N D I L+S+
Sbjct: 812 KSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSN--DINITIFLVSL 869
Query: 724 KCGGVGLNL 750
K GGV LNL
Sbjct: 870 KAGGVALNL 878
Score = 29.1 bits (62), Expect = 0.76
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +2
Query: 254 FNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYLAM 433
FNEEE+ +Y L +S+ + +A E + L ++ LI ++RQ+ HP L +
Sbjct: 641 FNEEEEDVYQSLYMDSKRKFNTYLA----EGVV--LNNYANIFQLITRMRQMADHPDLVL 694
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 33.5 bits (73), Expect = 0.035
Identities = 18/81 (22%), Positives = 36/81 (44%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L +D ++++ Q + + E + + L G K+ R T + +
Sbjct: 1441 LKANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRDMVTEWQTRPELF-- 1498
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
+ LLS + GG+G+NL +T+
Sbjct: 1499 VFLLSTRAGGLGINLTAADTV 1519
Score = 32.7 bits (71), Expect = 0.062
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 13/103 (12%)
Frame = +3
Query: 3 ALTATNRWCITGTPIHNKHWDMYSMINFLQCRPF---NDPRVW----------KMLNKNN 143
A NR +TGTPI N +++++++F+ F N+ W N
Sbjct: 995 AFKCRNRLLLTGTPIQNTMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAQSNTQLNE 1054
Query: 144 DSTNRIKSIIKKIVLKRDKSEISFNIPKHTVEYVHVNLMKKKK 272
R+ I+K +L+R K + + + + V+ +L +++K
Sbjct: 1055 QQLKRLHMILKPFMLRRVKKNVQSELGEKIEKEVYCDLTQRQK 1097
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 33.1 bits (72), Expect = 0.047
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Frame = +3
Query: 15 TNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKNNDSTNRIKSI---IKKIV 185
+NR ITGTP+ N ++ ++++FL F + + + I+S+ ++ +
Sbjct: 530 SNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEINLEAPDEEQEAYIRSLQEHLQPYI 589
Query: 186 LKRDKSEISFNIPKHTVEYVHVNL 257
L+R K ++ ++P + + V L
Sbjct: 590 LRRLKKDVEKSLPSKSERILRVEL 613
Score = 32.7 bits (71), Expect = 0.062
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L ++++ SQ V L I ++ + G + R + FN A ++
Sbjct: 702 LRRDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFN-APNSPDF 760
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
+ LLS + GG+G+NL+ +T+
Sbjct: 761 VFLLSTRAGGLGINLMTADTV 781
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 502 SAHLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLK 645
S HL+ N K+++ SQW++ L + F+ I + + G+ K
Sbjct: 1192 SKHLLYLKHNELYPKVVVFSQWLDVLDVLHKSFEANGIVFIRFDGKSK 1239
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 383 WLILKLRQICCHPYLAMHGRN 445
WL+ +LRQ CCHP + ++
Sbjct: 570 WLV-RLRQACCHPQVGFGNKS 589
Score = 25.8 bits (54), Expect = 7.1
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +3
Query: 18 NRWCITGTPIHNKHWDMYSMINFLQCRP 101
N W ++GTP+ ++ D++ ++ L+ P
Sbjct: 450 NCWTVSGTPVRSEVDDLFGLLFLLRYSP 477
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 568 VEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRIL 711
V+YL +F K +N+ T MY+ K + + + TT +N + +I+
Sbjct: 727 VDYLDLFLTSLKPENVTTGMYSDTSKSQSQ-QSVTTIDNKVNLLCKII 773
>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 671 VSAKILSSTFNWPVYINVAMFFC 603
+SA +LSS F W ++ + FC
Sbjct: 173 LSATVLSSNFAWAAFLGFSASFC 195
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = -3
Query: 196 SRFKTIFLIILFMRFVESLFLFNIFHTLGSLKGRHCKKLIIEYISQCLLW 47
SRF+ L I+F+ + +++L ++ LGS+ G + E+ ++ + W
Sbjct: 99 SRFQYKLLFIVFLSNLFAVYLQSLCIRLGSVTGMDLARNCREHYNRYICW 148
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 204 EISFNIPKHTVEYVHVNLMKKKKR 275
EI F+IP HT VH N+ K R
Sbjct: 419 EIQFSIPPHTNLIVHFNVEKTPLR 442
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 25.4 bits (53), Expect = 9.4
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +2
Query: 656 GFWPRRHSIMLPILNIE 706
GFWP+ +++P+L+ E
Sbjct: 191 GFWPKVQDVLVPLLDAE 207
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -1
Query: 468 KQSFVSKRFLPCMAKYGWQQICLNFSISHNTCCIC 364
+ S V ++ C+A G ++I + CCIC
Sbjct: 571 QSSSVWSTYIKCLASAGQKEIKRSVETGRAICCIC 605
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,227
Number of Sequences: 5004
Number of extensions: 67746
Number of successful extensions: 284
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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