Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120018.Seq
(789 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 62 4e-10
At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica... 56 3e-08
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 50 1e-06
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica... 50 1e-06
At3g19210.1 68416.m02438 DNA repair protein RAD54, putative simi... 49 4e-06
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 48 9e-06
At5g66750.1 68418.m08414 SNF2 domain-containing protein / helica... 47 1e-05
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica... 47 1e-05
At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica... 46 2e-05
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 46 2e-05
At2g02090.1 68415.m00145 SNF2 domain-containing protein / helica... 45 7e-05
At2g44980.1 68415.m05600 transcription regulatory protein SNF2, ... 44 2e-04
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 43 2e-04
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 43 2e-04
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 43 3e-04
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ... 43 3e-04
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 43 3e-04
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 42 5e-04
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 42 5e-04
At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468... 42 5e-04
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 42 6e-04
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 41 8e-04
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 41 8e-04
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica... 40 0.002
At5g19310.1 68418.m02301 homeotic gene regulator, putative simil... 40 0.002
At3g06010.1 68416.m00686 homeotic gene regulator, putative simil... 40 0.002
At3g57300.1 68416.m06378 transcriptional activator, putative sim... 39 0.004
At2g44980.2 68415.m05601 transcription regulatory protein SNF2, ... 38 0.008
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s... 37 0.018
At3g54280.1 68416.m05999 SNF2 domain-containing protein / helica... 37 0.018
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 36 0.031
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 35 0.054
At1g02670.1 68414.m00217 DNA repair protein, putative similar to... 35 0.071
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 31 0.66
At1g17120.1 68414.m02086 amino acid permease family protein low ... 31 0.87
At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica... 29 2.7
At1g36675.1 68414.m04563 glycine-rich protein 29 2.7
At4g25120.1 68417.m03614 UvrD/REP helicase family protein contai... 28 6.1
At1g48310.1 68414.m05396 SNF2 domain-containing protein / helica... 28 6.1
At1g79680.1 68414.m09293 wall-associated kinase, putative simila... 28 8.1
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 62.1 bits (144), Expect = 4e-10
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Frame = +3
Query: 6 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKML------NKNNDSTNRIKS 167
L A+ RW +TGTPI N +D+YS++ FL+ PF+ W+ L N +R++
Sbjct: 437 LKASRRWAVTGTPIQNGSFDLYSLMAFLRFEPFSIKSYWQSLIQRPLGQGNKKGLSRLQV 496
Query: 168 IIKKIVLKRDKSEISFNIPKHTVEYVHVNLMKKKKR 275
++ I L+R K + +P TVE +V L ++++
Sbjct: 497 LMATISLRRTKEKSLIGLPPKTVETCYVELSPEERQ 532
Score = 34.7 bits (76), Expect = 0.071
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +1
Query: 544 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 723
K ++ SQ+ + L + E K L G + V+ R F N T +LL S+
Sbjct: 708 KSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFGNPELTGPVVLLASL 767
Query: 724 KCGGVGLNL 750
K G G+NL
Sbjct: 768 KASGTGINL 776
>At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1029
Score = 56.0 bits (129), Expect = 3e-08
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Frame = +3
Query: 3 ALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVW-KMLNK-----NNDSTNRIK 164
AL A RWC+TGTPI N D+YS++ FL+ P+ W K++ K + ++
Sbjct: 591 ALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFEEGDERGLKLVQ 650
Query: 165 SIIKKIVLKRDKS 203
SI+K I+L+R KS
Sbjct: 651 SILKPIMLRRTKS 663
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/75 (33%), Positives = 38/75 (50%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L +S K IL SQW +L + + + N + + G L + R F+ D
Sbjct: 875 LRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSE--DGSIL 932
Query: 706 ILLLSIKCGGVGLNL 750
+LL+S+K GGVG+NL
Sbjct: 933 VLLMSLKAGGVGINL 947
Score = 37.5 bits (83), Expect = 0.010
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +2
Query: 236 RVCTC*FNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICC 415
RV C +E E+ YD L S+ + + V + L +L L+L+LRQ C
Sbjct: 681 RVIYCELSESERDFYDALFKRSKVKFDQFVEQGKV------LHNYASILELLLRLRQCCD 734
Query: 416 HPYLAMHGRNLLETNDCFKMD--YMSSK 493
HP+L M + E +D K+ ++S K
Sbjct: 735 HPFLVMSRGDTAEYSDLNKLSKRFLSGK 762
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 6/71 (8%)
Frame = +3
Query: 6 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVW-KMLNK---NND--STNRIKS 167
L++ RWC+TGTP+ NK D+YS++ FL P+ + W K++ K N D IK+
Sbjct: 841 LSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEPWCNWAWWSKLIQKPYENGDPRGLKLIKA 900
Query: 168 IIKKIVLKRDK 200
I++ ++L+R K
Sbjct: 901 ILRPLMLRRTK 911
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +1
Query: 535 SDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILL 714
S +K I+ SQW +L + E +++ L + G+L + R FN Q ILL
Sbjct: 1126 SGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETK--QKTILL 1183
Query: 715 LSIKCGGVGLNLIGGNTL 768
+S+K GGVGLNL +++
Sbjct: 1184 MSLKAGGVGLNLTAASSV 1201
Score = 31.9 bits (69), Expect = 0.50
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +2
Query: 227 THGRVCTC*FNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQ 406
T +V C +E E+ Y L S+ + + VA + L ++L L+L+LRQ
Sbjct: 927 TDVQVIECEQSEAERDFYTALFKRSKVQFDQFVAQGKV------LHNYANILELLLRLRQ 980
Query: 407 ICCHPYLAM 433
C HP+L M
Sbjct: 981 CCNHPFLVM 989
>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to RUSH-1alpha [Oryctolagus cuniculus]
GI:1655930; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1226
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 11/100 (11%)
Frame = +3
Query: 6 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKN------NDSTNRIKS 167
L A RWC++GTPI N D+YS FL+ P++ + + KN + +++
Sbjct: 739 LHAKRRWCLSGTPIQNSIADLYSYFRFLKYDPYSSYQTFCETIKNPISSYPGEGYKTLQA 798
Query: 168 IIKKIVLKRDKSEI-----SFNIPKHTVEYVHVNLMKKKK 272
I+KK++L+R K + ++P ++E V+ K+++
Sbjct: 799 ILKKVMLRRTKDTLLDGKPVISLPPKSIELRRVDFTKEER 838
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/80 (27%), Positives = 41/80 (51%)
Frame = +1
Query: 514 VDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAAD 693
V ++N + +K I+ +QW + L + E K I + G++ V R A FN D
Sbjct: 1063 VGGVVNVAGEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPD 1122
Query: 694 TQHRILLLSIKCGGVGLNLI 753
++++S+K +GLN++
Sbjct: 1123 VS--VMIMSLKAASLGLNMV 1140
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +2
Query: 254 FNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYL 427
F +EE+ Y KL+C+S + + + A T+ Q ++L ++L+LRQ C HP L
Sbjct: 833 FTKEERDFYSKLECDSRDQFKEYAEA----GTVK--QNYVNILLMLLRLRQACGHPLL 884
>At3g19210.1 68416.m02438 DNA repair protein RAD54, putative similar
to RAD54 GB:CAA71278 from [Drosophila melanogaster]
(Mol. Cell. Biol.(1997) 17 (10), 6097-6104)
Length = 852
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/88 (30%), Positives = 43/88 (48%)
Frame = +1
Query: 505 AHLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNN 684
+ L+ ++ +DD+I+LVS + + L +F +++ L G + R N+
Sbjct: 436 SRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKRQKLVNRLND 495
Query: 685 AADTQHRILLLSIKCGGVGLNLIGGNTL 768
+ LLS K GG GLNLIG N L
Sbjct: 496 PTKDEF-AFLLSSKAGGCGLNLIGANRL 522
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 1287
Score = 47.6 bits (108), Expect = 9e-06
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Frame = +3
Query: 6 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKNNDSTNRIK------S 167
L A RWC++GTPI N D+YS FL+ P++ ++ KN + N +K +
Sbjct: 819 LRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYSSYVLFCSTIKNPITRNPVKGYQKLQA 878
Query: 168 IIKKIVLKRDKSEI 209
I+K ++L+R K +
Sbjct: 879 ILKTVMLRRTKGSL 892
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/94 (25%), Positives = 43/94 (45%)
Frame = +1
Query: 472 NGLYEQQVQTSAHLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVE 651
+GL V+ VD + + +K I+ SQW + L + E +I G + V
Sbjct: 1108 SGLSITPVKNEGMSVDVPIKVAGEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVA 1167
Query: 652 DRILAETTFNNAADTQHRILLLSIKCGGVGLNLI 753
R A FN + ++++S+K +GLN++
Sbjct: 1168 ARDKAVQDFNTLPEV--TVMIMSLKAASLGLNMV 1199
Score = 34.3 bits (75), Expect = 0.094
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +2
Query: 254 FNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYL 427
F EE+ Y KL+ ES + RE + Q ++L ++L+LRQ C HP L
Sbjct: 913 FTVEERDFYSKLEAESRTQF------REYAEAGTVKQNYVNILLMLLRLRQACDHPLL 964
>At5g66750.1 68418.m08414 SNF2 domain-containing protein / helicase
domain-containing protein similar to
proliferation-associated SNF2-like protein [Homo
sapiens] GI:8980660; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain
Length = 764
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/80 (28%), Positives = 43/80 (53%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L ++ K+++ SQW + L I + +F +K G +K+++R F++ +
Sbjct: 536 LFANNHKVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCS- 594
Query: 706 ILLLSIKCGGVGLNLIGGNT 765
I LLS + GG+G+NL +T
Sbjct: 595 IFLLSTRAGGLGINLTAADT 614
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/107 (20%), Positives = 52/107 (48%), Gaps = 17/107 (15%)
Frame = +3
Query: 6 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPF---NDPRVW-KMLNKN-NDST------ 152
L N+ +TGTP+ N +++S++NF+ F ++ W KN N++T
Sbjct: 352 LKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTSHDEFESWFDFSEKNKNEATKEEEEK 411
Query: 153 ------NRIKSIIKKIVLKRDKSEISFNIPKHTVEYVHVNLMKKKKR 275
+++ I++ +L+R K ++ ++P+ ++ + +K+
Sbjct: 412 RRAQVVSKLHGILRPFILRRMKCDVELSLPRKKEIIMYATMTDHQKK 458
>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P79051 DNA
repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 833
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +3
Query: 3 ALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFN 107
AL AT RW ++GTP+ N+ ++YS+I FLQ RP++
Sbjct: 378 ALEATYRWALSGTPLQNRVGELYSLIRFLQIRPYS 412
Score = 35.1 bits (77), Expect = 0.054
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +1
Query: 544 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 723
K I+ SQ+ +L + + ++ + G + + R A F D R+ L+S+
Sbjct: 682 KAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINKFKEDPDC--RVFLMSL 739
Query: 724 KCGGVGLNL 750
K GGV LNL
Sbjct: 740 KAGGVALNL 748
>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P31244 DNA
repair protein RAD16 {Saccharomyces cerevisiae};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 638
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Frame = +3
Query: 3 ALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFN-----DPRVWKMLNKNN-DSTNRIK 164
+L A RWC+TGTPI NK D+YS FL+ P+ R+ ++K +++
Sbjct: 237 SLRAKRRWCLTGTPIKNKVDDLYSYFRFLRYHPYAMCNSFHQRIKAPIDKKPLHGYKKLQ 296
Query: 165 SIIKKIVLKRDKSEISF 215
+I++ I+L+R K E SF
Sbjct: 297 AILRGIMLRRTK-EWSF 312
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +2
Query: 263 EEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYL 427
+E + Y KL+ S + + A + TL + M ++L ++L+LRQ C HP L
Sbjct: 308 KEWSFYRKLELNSRWKFEEYAA----DGTLH--EHMAYLLVMLLRLRQACNHPQL 356
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +3
Query: 6 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVW 122
L +RWCITGTPI K D++ ++ FL+ PF+ R W
Sbjct: 609 LYTKHRWCITGTPIQRKLDDLFGLLKFLKANPFDVSRWW 647
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 338 SENTLSRLQQMQHVLWLILKLRQICCHPYLAMHGRNLLE 454
S+N L + +L +LKLRQ CCHP + G L+
Sbjct: 738 SDNPLVTHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ 776
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Frame = +1
Query: 544 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILA------ETTFNNAADTQHR 705
K+++ S W + L + E+ F +I + G K + I ET N+ + +
Sbjct: 1435 KVLVFSSWNDVLDVLEHAFAANSITCIRMKGGRKSQTAISKFKGSEKETQKTNSHQKEEK 1494
Query: 706 ---ILLLSIKCGGVGLNLI 753
+LLL ++ G GLNL+
Sbjct: 1495 SIQVLLLLVQHGANGLNLL 1513
>At2g02090.1 68415.m00145 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 763
Score = 44.8 bits (101), Expect = 7e-05
Identities = 30/91 (32%), Positives = 42/91 (46%)
Frame = +1
Query: 496 QTSAHLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETT 675
+T A L+ + S ++++ SQW L I E + G +V DR T
Sbjct: 591 RTLAELLPS-MKKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDT 649
Query: 676 FNNAADTQHRILLLSIKCGGVGLNLIGGNTL 768
FNN D LLS + GG GLNL G +T+
Sbjct: 650 FNN--DKSIFACLLSTRAGGQGLNLTGADTV 678
Score = 44.0 bits (99), Expect = 1e-04
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Frame = +3
Query: 3 ALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRV--WKMLN-KNNDSTNRIKSII 173
A A R +TGTP+ N +++S++ F+ F V K+LN ++ + R+KSI+
Sbjct: 373 ARNANQRLMLTGTPLQNDLHELWSLLEFMLPDIFTTENVDLKKLLNAEDTELITRMKSIL 432
Query: 174 KKIVLKRDKSEISFN-IPK-HTVEYVHVNLMKKKK 272
+L+R KS++ +PK VEYV LM++K+
Sbjct: 433 GPFILRRLKSDVMQQLVPKIQRVEYV---LMERKQ 464
>At2g44980.1 68415.m05600 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 851
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/81 (27%), Positives = 42/81 (51%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L+ S +++L SQ L I ++F + + + G ++ E+R A F+
Sbjct: 380 LHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFSVDGSNAF- 438
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
+ ++S + GGVGLNL+ +T+
Sbjct: 439 VFMISTRAGGVGLNLVAADTV 459
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Frame = +3
Query: 6 LTATN-RWCITGTPIHNKHWDMYSMINFLQCRPFNDPRV---WKMLNKNNDS---TNRIK 164
L +TN R ITGTP+ N ++++++NFL F+ W ++ ND ++
Sbjct: 340 LFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQISGENDQQEVVQQLH 399
Query: 165 SIIKKIVLKRDKSEISFNIP--KHTVEYVHVNLMKKK 269
+++ +L+R KS++ +P K T+ V ++ M+K+
Sbjct: 400 KVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQ 436
Score = 34.7 bits (76), Expect = 0.071
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L D ++++ SQ L I E++ + G ++R + +N +
Sbjct: 507 LKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKF- 565
Query: 706 ILLLSIKCGGVGLNL 750
+ LLS + GG+G+NL
Sbjct: 566 VFLLSTRAGGLGINL 580
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Frame = +3
Query: 6 LTATN-RWCITGTPIHNKHWDMYSMINFLQCRPFNDPRV---WKMLNKNNDS---TNRIK 164
L +TN R ITGTP+ N ++++++NFL F+ W ++ ND ++
Sbjct: 340 LFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQISGENDQQEVVQQLH 399
Query: 165 SIIKKIVLKRDKSEISFNIP--KHTVEYVHVNLMKKK 269
+++ +L+R KS++ +P K T+ V ++ M+K+
Sbjct: 400 KVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQ 436
Score = 34.7 bits (76), Expect = 0.071
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L D ++++ SQ L I E++ + G ++R + +N +
Sbjct: 507 LKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKF- 565
Query: 706 ILLLSIKCGGVGLNL 750
+ LLS + GG+G+NL
Sbjct: 566 VFLLSTRAGGLGINL 580
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Frame = +3
Query: 18 NRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKNNDSTN-----RIKSIIKKI 182
+R +TGTP+ N +MY+++NFLQ P + P + + +D T+ +K ++
Sbjct: 838 HRVLLTGTPLQNNIGEMYNLLNFLQ--PSSFPSLSSFEERFHDLTSAEKVEELKKLVAPH 895
Query: 183 VLKRDKSEISFNIPKHTVEYVHVNL 257
+L+R K + NIP T V V L
Sbjct: 896 MLRRLKKDAMQNIPPKTERMVPVEL 920
Score = 34.7 bits (76), Expect = 0.071
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Frame = +1
Query: 499 TSAHLVDDILNTSDDKIILVSQWVEYLKIFENF----FKQKNIATLMYTGQLKVEDRILA 666
T H + +L+ ++++ SQ + L I E++ F K + G + V DR A
Sbjct: 993 TLLHSMLKVLHKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTFERV--DGSVAVADRQAA 1050
Query: 667 ETTFNNAADTQHRILLLSIKCGGVGLNLIGGNTL 768
FN D + LLS + G+G+NL +T+
Sbjct: 1051 IARFNQ--DKNRFVFLLSTRACGLGINLATADTV 1082
>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1055
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Frame = +3
Query: 6 LTATN-RWCITGTPIHNKHWDMYSMINFLQCRPFNDPRV---WKMLNKNNDS---TNRIK 164
L +TN R ITGTP+ N ++++++NFL F+ W ++ ND ++
Sbjct: 335 LFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLH 394
Query: 165 SIIKKIVLKRDKSEISFNIP--KHTVEYVHVNLMKKK 269
+++ +L+R KS++ +P K T+ V ++ M+K+
Sbjct: 395 KVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQ 431
Score = 34.7 bits (76), Expect = 0.071
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L D ++++ SQ L I E++ + G ++R + +N +
Sbjct: 502 LKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKF- 560
Query: 706 ILLLSIKCGGVGLNL 750
+ LLS + GG+G+NL
Sbjct: 561 VFLLSTRAGGLGINL 575
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Frame = +3
Query: 6 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKNNDSTN------RIKS 167
L A RWC++GTPI N D+YS FL+ P+ + + K S N ++++
Sbjct: 496 LRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFCHQIKGPISRNSLQGYKKLQA 555
Query: 168 IIKKIVLKRDKSEI-----SFNIPKHTVEYVHVNLMKKKK 272
+++ I+L+R K + N+P T+ V+ +++
Sbjct: 556 VLRAIMLRRTKGTLLDGQPIINLPPKTINLSQVDFSVEER 595
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +1
Query: 544 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 723
K I+ SQW L + E + +I G + + R A F+N D +++++S+
Sbjct: 828 KTIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDV--KVMIMSL 885
Query: 724 KCGGVGLNLI 753
K G +GLN+I
Sbjct: 886 KAGNLGLNMI 895
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +2
Query: 254 FNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYL 427
F+ EE++ Y KL+ +S + KA AA + N Q ++L ++L+LRQ C HP L
Sbjct: 590 FSVEERSFYVKLESDSRSQF-KAYAAAGTLN-----QNYANILLMLLRLRQACDHPQL 641
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 41.9 bits (94), Expect = 5e-04
Identities = 26/81 (32%), Positives = 40/81 (49%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L + +++L S + L I E + + + + G +EDR A FN+ DT
Sbjct: 1320 LQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDP-DTDCF 1378
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
I LLSI+ G GLNL +T+
Sbjct: 1379 IFLLSIRAAGRGLNLQTADTV 1399
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 41.9 bits (94), Expect = 5e-04
Identities = 26/81 (32%), Positives = 40/81 (49%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L + +++L S + L I E + + + + G +EDR A FN+ DT
Sbjct: 1319 LQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDP-DTDCF 1377
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
I LLSI+ G GLNL +T+
Sbjct: 1378 IFLLSIRAAGRGLNLQTADTV 1398
>At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF02810: SEC-C motif
Length = 862
Score = 41.9 bits (94), Expect = 5e-04
Identities = 26/74 (35%), Positives = 34/74 (45%)
Frame = +1
Query: 541 DKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLS 720
DKI+L S V L I E F +K + G R FN A ++ L+S
Sbjct: 545 DKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFN--ASPSKQVFLIS 602
Query: 721 IKCGGVGLNLIGGN 762
K GG+GLNL+ N
Sbjct: 603 TKAGGLGLNLVSAN 616
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 41.5 bits (93), Expect = 6e-04
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Frame = +3
Query: 6 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKNNDSTN------RIKS 167
L A RWC++GTPI N D+YS FL+ P+ + + K S N ++++
Sbjct: 567 LRAKRRWCLSGTPIQNTIDDLYSYFRFLRYDPYAVYKSFYSTIKVPISRNSCQGYKKLQA 626
Query: 168 IIKKIVLKRDKSEI 209
+++ I+L+R K +
Sbjct: 627 VLRAIMLRRTKGTL 640
Score = 35.9 bits (79), Expect = 0.031
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +2
Query: 254 FNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYL 427
F+ E++ Y KL+ +S + KA A TLS Q ++L L+L+LRQ C HP L
Sbjct: 661 FSVAERSFYKKLEADSRSQF-KAYA---DAGTLS--QNYANILLLLLRLRQACDHPQL 712
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 41.1 bits (92), Expect = 8e-04
Identities = 25/81 (30%), Positives = 38/81 (46%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L +D +++ S L + E++ K L GQ DR FN + +
Sbjct: 1085 LKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSG-SPFF 1143
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
I LLSI+ GGVG+NL +T+
Sbjct: 1144 IFLLSIRAGGVGVNLQAADTV 1164
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 20/92 (21%)
Frame = +3
Query: 12 ATNRWCITGTPIHNKHWDMYSMINFLQCRPFN---DPRVW--KMLNKNNDST-------- 152
+++R +TGTP+ N ++++++NFL FN D W K N +S+
Sbjct: 905 SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSE 964
Query: 153 -------NRIKSIIKKIVLKRDKSEISFNIPK 227
NR+ +++ VL+R K ++ +P+
Sbjct: 965 EENLLIINRLHQVLRPFVLRRLKHKVENELPE 996
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 257 NEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLW-LILKLRQICCHPYLA 430
NE + + ++CE+ AY K + R +N S + +++LR IC HPYL+
Sbjct: 992 NELPEKIERLIRCEAS-AYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPYLS 1049
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 41.1 bits (92), Expect = 8e-04
Identities = 25/81 (30%), Positives = 38/81 (46%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L +D +++ S L + E++ K L GQ DR FN + +
Sbjct: 1085 LKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSG-SPFF 1143
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
I LLSI+ GGVG+NL +T+
Sbjct: 1144 IFLLSIRAGGVGVNLQAADTV 1164
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 20/92 (21%)
Frame = +3
Query: 12 ATNRWCITGTPIHNKHWDMYSMINFLQCRPFN---DPRVW--KMLNKNNDST-------- 152
+++R +TGTP+ N ++++++NFL FN D W K N +S+
Sbjct: 905 SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSE 964
Query: 153 -------NRIKSIIKKIVLKRDKSEISFNIPK 227
NR+ +++ VL+R K ++ +P+
Sbjct: 965 EENLLIINRLHQVLRPFVLRRLKHKVENELPE 996
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 257 NEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLW-LILKLRQICCHPYLA 430
NE + + ++CE+ AY K + R +N S + +++LR IC HPYL+
Sbjct: 992 NELPEKIERLIRCEAS-AYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPYLS 1049
>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|Q03468 Excision
repair protein ERCC-6 (Cockayne syndrome protein CSB)
{Homo sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1187
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = +1
Query: 544 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 723
+++L SQ + L I E+F + G V+ R+ FNN+ D + +L+
Sbjct: 745 RVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMALIDEFNNSEDM--FVFVLTT 802
Query: 724 KCGGVGLNLIGGN 762
K GG+G NL G N
Sbjct: 803 KVGGLGTNLTGAN 815
>At5g19310.1 68418.m02301 homeotic gene regulator, putative similar
to SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1064
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/81 (28%), Positives = 39/81 (48%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L + +I+L SQ + + E + + L G K + R + FN D+ +
Sbjct: 707 LKKAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFNEP-DSPYF 765
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
+ LLS + GG+GLNL +T+
Sbjct: 766 MFLLSTRAGGLGLNLQTADTI 786
Score = 31.1 bits (67), Expect = 0.87
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Frame = +3
Query: 21 RWCITGTPIHNKHWDMYSMINFLQCRPFN---DPRVW----------KMLNKNND--STN 155
R +TGTPI N +++S++NFL FN + W L + N
Sbjct: 538 RLLLTGTPIQNSLQELWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSASLTDEEELLIIN 597
Query: 156 RIKSIIKKIVLKRDKSEISFNIPKHT 233
R+ +I+ +L+R KSE+ +P T
Sbjct: 598 RLHHVIRPFLLRRKKSEVEKFLPGKT 623
>At3g06010.1 68416.m00686 homeotic gene regulator, putative similar
to SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1132
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/81 (29%), Positives = 39/81 (48%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L + +I+L SQ + + E + + L G K + R L FN D+ +
Sbjct: 755 LRKAGHRILLFSQMTRLIDVLEIYLTLNDYKYLRLDGTTKTDQRGLLLKQFNEP-DSPYF 813
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
+ LLS + GG+GLNL +T+
Sbjct: 814 MFLLSTRAGGLGLNLQTADTV 834
Score = 31.9 bits (69), Expect = 0.50
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Frame = +3
Query: 21 RWCITGTPIHNKHWDMYSMINFLQCRPFNDPR---VW---KMLNKNNDS---------TN 155
R +TGTPI N +++S++NFL FN + W ++ N S +
Sbjct: 586 RLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFEEWFNAPFADRGNVSLTDEEELLIIH 645
Query: 156 RIKSIIKKIVLKRDKSEISFNIPKHT 233
R+ +I+ +L+R K E+ +P T
Sbjct: 646 RLHHVIRPFILRRKKDEVEKFLPGKT 671
>At3g57300.1 68416.m06378 transcriptional activator, putative similar
to transcriptional activator SRCAP [Homo sapiens]
GI:5106572; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1507
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L + +++L +Q + L I E++ + L G + DR F + +D
Sbjct: 1218 LRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIF-- 1275
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
+ LLS + GG+G+NL +T+
Sbjct: 1276 VFLLSTRAGGLGINLTAADTV 1296
Score = 35.1 bits (77), Expect = 0.054
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Frame = +3
Query: 18 NRWCITGTPIHNKHWDMYSMINFLQCRPF-NDPRVWKMLNK------------NNDSTNR 158
NR +TGTPI N +++++++F+ F N + + +K N NR
Sbjct: 743 NRLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGIENHAEHGGTLNEHQLNR 802
Query: 159 IKSIIKKIVLKRDKSEISFNIPKHTVEYVHVNLMKKKK 272
+ +I+K +L+R K ++ + T VH L +++
Sbjct: 803 LHAILKPFMLRRVKKDVVSELTTKTEVTVHCKLSSRQQ 840
>At2g44980.2 68415.m05601 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 870
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAAD---- 693
L+ S +++L SQ L I ++F + + + G ++ E+R A F+ +
Sbjct: 389 LHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFSAKTERGLD 448
Query: 694 -----TQHRILLLSIKCGGVGLNLIGGNTL 768
+ + ++S + GGVGLNL+ +T+
Sbjct: 449 SEVDGSNAFVFMISTRAGGVGLNLVAADTV 478
>At4g31900.1 68417.m04533 chromatin remodeling factor, putative
strong similarity to chromatin remodeling factor CHD3
(PICKLE) [Arabidopsis thaliana] GI:6478518; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 1202
Score = 36.7 bits (81), Expect = 0.018
Identities = 21/81 (25%), Positives = 41/81 (50%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L ++++ +Q+ L + E++F KN G++ +R + FN A ++
Sbjct: 536 LKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFN-AENSNRF 594
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
LLS + GG+G+NL +T+
Sbjct: 595 CFLLSTRAGGIGINLATADTV 615
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/82 (20%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +3
Query: 30 ITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKNNDSTNRIKSIIKKIVLKRDKSEI 209
+TGTP+ N +++++++FL F ++ +NK + +R+ ++ +L+R K ++
Sbjct: 383 LTGTPLQNNLNELFALMHFLDADKFGSLEKFQDINK-EEQISRLHQMLAPHLLRRLKKDV 441
Query: 210 -SFNIPKHTVEYVHVNLMKKKK 272
+P + V++ ++K
Sbjct: 442 LKDKVPPKKELILRVDMSSQQK 463
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 260 EEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYL 427
++E L + + +E Y + T R ++ +VL +KLRQ+C HPYL
Sbjct: 449 KKELILRVDMSSQQKEVYKAVITNNYQVLTKKRDAKISNVL---MKLRQVCSHPYL 501
>At3g54280.1 68416.m05999 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|O14981
TBP-associated factor 172 (TAF-172) (TAF(II)170) {Homo
sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 2049
Score = 36.7 bits (81), Expect = 0.018
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Frame = +1
Query: 478 LYEQQVQTSAHLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYT---GQLKV 648
L E + + A D L+ ++++ +Q L I E Q ++ ++ Y G +
Sbjct: 1803 LEECGIGSDASSSDGTLSVGQHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVP 1862
Query: 649 EDRILAETTFNNAADTQHRILLLSIKCGGVGLNLIGGNTL 768
E R FN+ D +LLL+ GG+GLNL +TL
Sbjct: 1863 EKRFEIVKAFNS--DPTIDVLLLTTHVGGLGLNLTSADTL 1900
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2) {Homo
sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 35.9 bits (79), Expect = 0.031
Identities = 23/81 (28%), Positives = 35/81 (43%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L + ++++ SQ V L I + + G K E R A FN A
Sbjct: 949 LRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPASDDF- 1007
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
LLS + GG+G+NL +T+
Sbjct: 1008 CFLLSTRAGGLGINLATADTV 1028
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/91 (20%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Frame = +3
Query: 18 NRWCITGTPIHNKHWDMYSMINFLQCRPFNDP----RVWKMLNKNNDS-TNRIKSIIKKI 182
N+ ITGTP+ N +++++++FL F + +K L+ N+S + ++
Sbjct: 781 NKLLITGTPLQNSVEELWALLHFLDPGKFKNKDEFVENYKNLSSFNESELANLHLELRPH 840
Query: 183 VLKRDKSEISFNIPKHTVEYVHVNLMKKKKR 275
+L+R ++ ++P + V + +K+
Sbjct: 841 ILRRVIKDVEKSLPPKIERILRVEMSPLQKQ 871
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 35.1 bits (77), Expect = 0.054
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +1
Query: 544 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 723
+ ++ +Q + L + E F + G E+R FN + + + +LS
Sbjct: 1093 RALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNT--NPKIFLFILST 1150
Query: 724 KCGGVGLNLIGGNTL 768
+ GGVG+NL+G +T+
Sbjct: 1151 RSGGVGINLVGADTV 1165
Score = 31.5 bits (68), Expect = 0.66
Identities = 19/78 (24%), Positives = 40/78 (51%)
Frame = +2
Query: 257 NEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYLAMH 436
++ E ++ +L Y +A+ E++ TL+ ++ +I++LR++C HP L
Sbjct: 769 SKHEHVIFCRLSKRQRNLYEDFIASTETQATLTS-GSFFGMISIIMQLRKVCNHPDL-FE 826
Query: 437 GRNLLETNDCFKMDYMSS 490
GR ++ + D +D S
Sbjct: 827 GRPIVSSFDMAGIDVQLS 844
>At1g02670.1 68414.m00217 DNA repair protein, putative similar to
SP|P79051 DNA repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 678
Score = 34.7 bits (76), Expect = 0.071
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +1
Query: 544 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 723
K I+ SQ+ +L + + ++ + G + + A F D R+LL+S+
Sbjct: 527 KAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAKDAALKNFKEEPDC--RVLLMSL 584
Query: 724 KCGGVGLNL 750
+ GGV LNL
Sbjct: 585 QAGGVALNL 593
Score = 34.3 bits (75), Expect = 0.094
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +3
Query: 3 ALTATNRWCITGTPIHNKHWDMYSMINF 86
AL AT RW ++GTP+ N ++YS++++
Sbjct: 293 ALEATYRWALSGTPLQNDVDELYSLVSY 320
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 31.5 bits (68), Expect = 0.66
Identities = 19/92 (20%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Frame = +3
Query: 9 TATNRWCITGTPIHNKHWDMYSMINFLQCRPFND----PRVWKMLNKNNDSTNRIKSIIK 176
++ +R +TGTP+ N +++ +++FL F +K +N+ + +R+ ++
Sbjct: 442 SSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ-EEQISRLHKMLA 500
Query: 177 KIVLKRDKSEISFNIPKHTVEYVHVNLMKKKK 272
+L+R K ++ ++P + V+L +K
Sbjct: 501 PHLLRRVKKDVMKDMPPKKELILRVDLSSLQK 532
Score = 31.5 bits (68), Expect = 0.66
Identities = 19/81 (23%), Positives = 39/81 (48%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L ++++ +Q+ L + E++ K G++ +R + FN A ++
Sbjct: 607 LKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFN-AKNSNKF 665
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
LLS + GG+G+NL +T+
Sbjct: 666 CFLLSTRAGGLGINLATADTV 686
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 302 EEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYLAMHGRNLL-ETNDCFK 472
++ Y KA+ R + + + ++++LR++CCHPY+ ++ + N+ FK
Sbjct: 531 QKEYYKAIFTRNYQVLTKKGGAQISLNNIMMELRKVCCHPYMLEGVEPVIHDANEAFK 588
>At1g17120.1 68414.m02086 amino acid permease family protein low
similarity to SP|O43246 Cationic amino acid
transporter-4 (CAT-4) {Homo sapiens}; contains Pfam
profile PF00324: Amino acid permease
Length = 590
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 275 LYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWL 388
L D+L S +AY A RESEN + R +LWL
Sbjct: 56 LADRLLSRSSDAYELDAARRESENPMRRCLTWWDLLWL 93
>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
domain-containing protein / F-box family protein similar
to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00646: F-box domain
Length = 1378
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +3
Query: 3 ALTATNRWCITGTPIHNKHWDMYS----MINFLQCRPFND-PRVWK 125
+LTA NRW +TGTP N S ++ FL + + P+ W+
Sbjct: 854 SLTACNRWLLTGTPTPNTPNSQLSHIQPLLKFLHEEVYGENPKFWE 899
>At1g36675.1 68414.m04563 glycine-rich protein
Length = 268
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 532 TSDDKIILVSQWVEYLKIFENF-FKQKNIATLMYTGQLKVEDRILAETTFNNAADT 696
T+D ++L+S+W++Y +I K+ N+ + +G K A ++NA +T
Sbjct: 79 TTDQNLVLLSRWIKYEQIVSLVETKKDNVKRMQQSGWSKDGVLAKAHELYSNAGNT 134
>At4g25120.1 68417.m03614 UvrD/REP helicase family protein contains
Pfam PF00580: UvrD/REP helicase
Length = 1122
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 248 C*FNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWL 388
C EEE + +K C +++ ++ RE+EN SR + ++ + L
Sbjct: 773 CTTTEEEDAIKEKKGCNQLHSFINYISERETENFRSRRRDNENSVTL 819
>At1g48310.1 68414.m05396 SNF2 domain-containing protein / helicase
domain-containing protein contains similarity to
DNA-dependent ATPase A GI:6651385 from [Bos taurus]};
contains PFam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2
Length = 673
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/75 (21%), Positives = 32/75 (42%)
Frame = +1
Query: 544 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 723
K ++ + L+ F K+K + + G R + F + + + +L SI
Sbjct: 486 KFLVFAHHQSMLEELHQFLKKKKVGCIRIDGSTPASSRQALVSDFQDKDEIKAAVL--SI 543
Query: 724 KCGGVGLNLIGGNTL 768
+ GVG+ L +T+
Sbjct: 544 RAAGVGITLTAASTV 558
>At1g79680.1 68414.m09293 wall-associated kinase, putative similar
to wall-associated kinase 2 GI:4826399 from [Arabidopsis
thaliana]
Length = 769
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 441 LPCMAKYGWQQICLNFSISHNTCC 370
L C A+YG + C N SI ++T C
Sbjct: 168 LYCNARYGDSEYCKNISIMNDTSC 191
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,916,115
Number of Sequences: 28952
Number of extensions: 346840
Number of successful extensions: 1114
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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