Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120017.Seq
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 32 0.54
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 31 0.71
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351... 31 0.71
07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961 31 1.2
08_02_0644 - 19658270-19658626,19659142-19659218,19659256-196594... 30 2.2
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360... 30 2.2
04_04_1126 + 31095651-31096115 29 2.9
12_01_0249 + 1850443-1851030 29 3.8
05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023 29 3.8
05_03_0069 + 8004235-8004350,8004927-8005215,8005314-8005375,800... 29 3.8
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190... 29 3.8
04_04_1393 - 33204699-33204806,33204927-33205164,33205581-332058... 29 3.8
02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453... 29 5.0
12_01_1068 - 11052769-11052943,11053103-11053182,11053304-110534... 28 6.6
03_02_0834 - 11630288-11630500,11630531-11630623,11630844-116310... 28 6.6
02_04_0517 - 23599154-23600089 28 6.6
07_03_1544 - 27585581-27585757,27585986-27586091,27586246-275863... 28 8.8
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 31.9 bits (69), Expect = 0.54
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 31 YNTPPPPLRY-PSNPATAIFTNAQTYN-NAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYN 204
YN P Y P++P+ + + + +Y+ +P Y P + N TS S S S + +P +
Sbjct: 1697 YNPTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTS 1756
Query: 205 KSKEPT 222
S PT
Sbjct: 1757 PSYSPT 1762
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 28 YYNTPPPPLRYPSNPATAIFTNAQTYN-NAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYN 204
Y +P P P++P+ + + +Y+ +P Y T + TS S S S + +P +
Sbjct: 1704 YSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPTS 1763
Query: 205 KSKEPT 222
S PT
Sbjct: 1764 PSYSPT 1769
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 31.5 bits (68), Expect = 0.71
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 81 HIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSD 191
H HQ+ +QQ RAA +QQ + QQQ +L D
Sbjct: 100 HQHQQIQMQQMLLQRAAQQQQQQQQQQQQQQQQLHRD 136
>01_05_0652 -
23934604-23934636,23934783-23934893,23935000-23935188,
23935893-23936012,23936109-23936273,23936638-23936790,
23936867-23936976,23937280-23937397,23938197-23938427,
23938984-23939175,23939661-23939945,23940637-23940686,
23940846-23940921,23941048-23941135,23941689-23941771,
23941883-23942248,23942462-23942476,23942909-23943018,
23943134-23943231,23943961-23944019
Length = 883
Score = 31.5 bits (68), Expect = 0.71
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 90 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTD 221
Q +QQ RAA +QQ + QQQ + + QQ+QR D
Sbjct: 120 QHIQMQQMLLQRAAQQQQQQQQQQQQQQQQQQQQQQQQQQQRRD 163
>07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961
Length = 221
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 40 PPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDT 159
PPPP P +P A+F +A+ +P P+TR ++ T
Sbjct: 5 PPPPSAPPPSPPRAVFPSARCCLPSPHRFLPSTRRKRLVT 44
>08_02_0644 -
19658270-19658626,19659142-19659218,19659256-19659430,
19659543-19659596,19659691-19659858,19660756-19660953,
19661546-19661632,19661739-19661827,19662499-19662955
Length = 553
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +3
Query: 30 LQHPSAAAEVSL*SGNGHIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQE 209
L P AAA SL + R R+++ AR++ + + + G D +V +E
Sbjct: 7 LSFPVAAASKSLSFPAAAQSNKGTPAARKRIKSGGGAREKKENSGGAREEQGKDDSVGEE 66
Query: 210 Q---RTDARRRR 236
Q R D RRRR
Sbjct: 67 QVQRRRDGRRRR 78
>01_01_0489 +
3608720-3608811,3609326-3609431,3609518-3609581,
3609905-3609965,3610017-3610144,3610236-3610385,
3610537-3610791,3611060-3611265,3611469-3611696,
3612161-3612259
Length = 462
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = -1
Query: 473 LGRVALSQLFLQPNQVAYHGLLRFKPLYHVYVDRVRVDAHVTNSVYKMNHERTKF*HVIA 294
+GR+ P+ A GLLR P++ V++D VRV + +Y++ + K+ ++
Sbjct: 247 VGRLVKGSSKPHPSLPARGGLLRTAPVHEVHLDLVRVS---SGKIYRLRNPSRKYLASLS 303
Query: 293 PVISNN 276
S+N
Sbjct: 304 SYDSSN 309
>04_04_1126 + 31095651-31096115
Length = 154
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -1
Query: 653 CCTSPIPPPCTGRPS*VVCPPRPKRLYPTYQRHRCKI 543
C T PPP PS V CPP P P +C +
Sbjct: 36 CPTPKPPPPPPPAPSGVPCPPPPYTPTPATPTGKCPV 72
>12_01_0249 + 1850443-1851030
Length = 195
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 540 CAYAGSEFSTKMPEIYSNRSAGTRPRCLVPTLFATESGG 424
C++ + S+ + S+ SA T PR ++PT A S G
Sbjct: 35 CSFGSTTSSSSLAASSSDDSAATTPRSVLPTSAAASSSG 73
>05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023
Length = 620
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +3
Query: 30 LQHPSAAAEVSL*SGNGHIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQE 209
L SA A V+L S H H RA A + +N P G+DR+ + E
Sbjct: 540 LPRRSACASVALKSSGCHHHVRAGAAAAAHGSVRTSRQSRNNAPPMAPTIRGADRSSEGE 599
Query: 210 QR 215
+R
Sbjct: 600 RR 601
>05_03_0069 +
8004235-8004350,8004927-8005215,8005314-8005375,
8005516-8005602,8005667-8005723,8005940-8006004,
8006292-8006320
Length = 234
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +1
Query: 43 PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPT 222
PPP + NP+T I + + P P + +K T +++ST AI S E T
Sbjct: 146 PPPAPHTDNPSTTIHNTGASSKSTP---PEISLADKTPTEKTSSTRKRAIDFTKDSIEET 202
>05_01_0251 +
1901709-1901864,1901968-1901999,1902534-1902664,
1902740-1902821,1902928-1903054,1903369-1903686,
1903785-1903846,1903988-1904074,1904139-1904195,
1906113-1906197,1906916-1907185,1908158-1908254,
1908390-1908436,1908826-1908939,1909024-1909117,
1909360-1909457,1910356-1910455,1911445-1911521,
1911824-1913122
Length = 1110
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +1
Query: 43 PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPT 222
PPP + NP+T I + + P P + +K T +++ST AI S E T
Sbjct: 293 PPPAPHTDNPSTTIHNTGASSKSTP---PEISLADKTPTEKTSSTTKRAIDFTKDSIEET 349
>04_04_1393 -
33204699-33204806,33204927-33205164,33205581-33205825,
33206229-33206339,33206645-33206743,33207684-33207731,
33207882-33207999,33208085-33208115,33208700-33208806,
33209644-33209725,33210010-33210104,33210579-33210664,
33211074-33211195,33211613-33211824,33212362-33212510,
33212755-33212982
Length = 692
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 273 KIIRYYRCNDMSELSPLMIHFINTIRDM 356
KII Y+ N+++++S L HFI+ + D+
Sbjct: 599 KIIESYKSNNVNQVSNLCQHFIDLVNDL 626
>02_04_0005 -
18843061-18843201,18843309-18843440,18844457-18845315,
18845884-18845973,18846748-18846869,18846950-18847049,
18847151-18847205,18847275-18847365,18847453-18847572,
18847681-18847780,18847890-18848018,18848099-18848201,
18848670-18848743,18848848-18848933,18849297-18849358,
18849454-18849541,18849937-18850029
Length = 814
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 16 RGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTS 162
+G+ Y PPPP P A+F + Y PPT R+ ++ S
Sbjct: 665 KGSTCYPPPPPPSSTPPVEPVAVFPPPPSPACGVYYPPPTVREPVINRS 713
>12_01_1068 -
11052769-11052943,11053103-11053182,11053304-11053401,
11053487-11053627,11053701-11053841,11053933-11054017,
11055296-11055826,11055926-11055940
Length = 421
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 31 YNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPY--N 204
++ PPP Y + A ++++ +Y PP D + +S S +VA AP
Sbjct: 77 WDPPPPSSPYSAGHAADEYSSSSSYRRRGASAPP-AEDVVVSSSYSRPAAAVASAPQACT 135
Query: 205 KSKEPTLDAGES 240
S P L A E+
Sbjct: 136 VSSAPPLRAVET 147
>03_02_0834 -
11630288-11630500,11630531-11630623,11630844-11631050,
11631301-11633089,11633817-11634145
Length = 876
Score = 28.3 bits (60), Expect = 6.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 620 GRPS*VVCPPRPKRLY 573
GRPS ++C PRP +L+
Sbjct: 858 GRPSDIICSPRPSKLF 873
>02_04_0517 - 23599154-23600089
Length = 311
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 156 HEPQQQHKLGSDRTVQQEQRTDARRRRIYLVQQCVD 263
+E + Q L T++QE++ R RR YL +C D
Sbjct: 4 NEEKAQSMLNRFITMKQEEKRKPRERRPYLASECRD 39
>07_03_1544 -
27585581-27585757,27585986-27586091,27586246-27586338,
27587840-27587958,27588486-27588746,27589226-27589515,
27589624-27590152
Length = 524
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 613 GRPVHGGGIGDVQHSHSVTVQSAAGQQLHDSVAQA 717
G P G+G Q++ VTV +AAG+ L +A+A
Sbjct: 88 GLPGQPAGVGFAQYAGYVTVDAAAGRALFYYLAEA 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,718,574
Number of Sequences: 37544
Number of extensions: 470586
Number of successful extensions: 2052
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2028
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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