Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120016.Seq
(678 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran... 72 8e-13
AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprot... 72 8e-13
AF541949-2|AAN34652.1| 826|Drosophila melanogaster pol protein ... 71 1e-12
AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed... 71 1e-12
AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein ... 70 3e-12
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros... 68 1e-11
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen... 68 1e-11
AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse tran... 67 2e-11
X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein ( Dros... 66 6e-11
AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein ... 66 6e-11
AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein. 65 7e-11
AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein ... 65 1e-10
AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran... 64 1e-10
AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein. 64 2e-10
AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed... 64 2e-10
X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein pr... 64 2e-10
AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p pro... 64 2e-10
X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein. 63 4e-10
X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein ( Dros... 62 5e-10
AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed... 60 4e-09
AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein ... 59 5e-09
X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D. m... 58 8e-09
M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protei... 58 8e-09
EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein ... 58 8e-09
DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein ... 58 8e-09
DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein ... 58 8e-09
AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol pr... 58 8e-09
EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein ... 57 2e-08
AF541947-2|AAN34648.1| 407|Drosophila melanogaster truncated po... 54 2e-07
Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia poly... 52 5e-07
AY050234-1|AAK84933.1| 1026|Drosophila melanogaster SD02026p pro... 52 5e-07
U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse transc... 50 4e-06
X52759-1|CAA36970.1| 365|Drosophila melanogaster glutamine synt... 29 7.7
>AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse
transcriptase-like polymeraseprotein.
Length = 1059
Score = 71.7 bits (168), Expect = 8e-13
Identities = 37/106 (34%), Positives = 61/106 (57%)
Frame = +1
Query: 244 FQAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRF 423
F+ ++ + KC F +V FLG +S G + ++QA+ DFP+P+T++ LR F
Sbjct: 374 FRTLQQANMKCQLDKCEFMKRKVEFLGFVVSDKGIETSPTKVQAISDFPIPRTLKELRSF 433
Query: 424 IGMVNYYRRFLRNAAKLQAPLVNAIVATEVKVSHRSLGHLSSKNAL 561
+G+ YYRRF+ N AKL PL + + + ++S LSSK ++
Sbjct: 434 LGLSGYYRRFIPNYAKLAKPLSSLLRGEDGRISRT----LSSKKSV 475
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/51 (43%), Positives = 29/51 (56%)
Frame = +3
Query: 6 IDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFIDE 158
+DL + QI + DI KTA G YEF + FGL+NA FQR +D+
Sbjct: 289 LDLKSGFHQILLKESDIEKTAFSINNGKYEFTRLPFGLKNAPSIFQRALDD 339
Score = 36.7 bits (81), Expect = 0.029
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +2
Query: 170 CFAYVDDILVYSRDALQHAAHLRTLFKRLK 259
CF Y+DDI+++S+D H +L T+F+ L+
Sbjct: 349 CFIYIDDIIIFSKDDETHYQNLDTIFRTLQ 378
>AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprotein
protein.
Length = 437
Score = 71.7 bits (168), Expect = 8e-13
Identities = 37/106 (34%), Positives = 61/106 (57%)
Frame = +1
Query: 244 FQAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRF 423
F+ ++ + KC F +V FLG +S G + ++QA+ DFP+P+T++ LR F
Sbjct: 218 FRTLQQANMKCQLDKCEFMKRKVEFLGFVVSDKGIETSPTKVQAISDFPIPRTLKELRSF 277
Query: 424 IGMVNYYRRFLRNAAKLQAPLVNAIVATEVKVSHRSLGHLSSKNAL 561
+G+ YYRRF+ N AKL PL + + + ++S LSSK ++
Sbjct: 278 LGLSGYYRRFIPNYAKLAKPLSSLLRGEDGRISRT----LSSKKSV 319
Score = 43.6 bits (98), Expect = 3e-04
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +3
Query: 6 IDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFID 155
+DL + QI + DI KTA G YEF + FGL+NA FQR +D
Sbjct: 132 LDLKSGFHQILLKESDIEKTAFSINNGKYEFTRLPFGLKNAPSIFQRALD 181
>AF541949-2|AAN34652.1| 826|Drosophila melanogaster pol protein
protein.
Length = 826
Score = 71.3 bits (167), Expect = 1e-12
Identities = 29/75 (38%), Positives = 43/75 (57%)
Frame = +1
Query: 244 FQAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRF 423
F Y + ++P KC F EVTFLG++ + G P ++ +K++P+P RRF
Sbjct: 83 FNVCRKYNLKLHPEKCSFFMHEVTFLGHKCTDKGVLPDDKKYDVIKNYPVPHDADSARRF 142
Query: 424 IGMVNYYRRFLRNAA 468
+ NYYRRF+RN A
Sbjct: 143 VAFCNYYRRFIRNFA 157
>AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 826
Score = 71.3 bits (167), Expect = 1e-12
Identities = 29/75 (38%), Positives = 43/75 (57%)
Frame = +1
Query: 244 FQAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRF 423
F Y + ++P KC F EVTFLG++ + G P ++ +K++P+P RRF
Sbjct: 83 FNVCRKYNLKLHPEKCSFFMHEVTFLGHKCTDKGVLPDDKKYDVIKNYPVPHDADSARRF 142
Query: 424 IGMVNYYRRFLRNAA 468
+ NYYRRF+RN A
Sbjct: 143 VAFCNYYRRFIRNFA 157
>AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein
protein.
Length = 849
Score = 70.1 bits (164), Expect = 3e-12
Identities = 29/85 (34%), Positives = 51/85 (60%)
Frame = +1
Query: 244 FQAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRF 423
F+ + + + KC F E TFLG+ I+ DG +P E+I+A++D+PLP + ++ F
Sbjct: 348 FEKLSQANLKLQLDKCEFLRQETTFLGHVITKDGIKPNPEKIKAIQDYPLPSKPKEIKAF 407
Query: 424 IGMVNYYRRFLRNAAKLQAPLVNAI 498
+G+ YYR+F+ N + + PL +
Sbjct: 408 LGITGYYRKFIPNFSDIAKPLTKCL 432
Score = 55.2 bits (127), Expect = 8e-08
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQR 146
TIDL K + QI + E I KTA T +G YE+ M FGL+NA TFQR
Sbjct: 262 TIDLAKGFHQIEMDSESIAKTAFSTKYGHYEYTRMPFGLKNAPATFQR 309
Score = 32.3 bits (70), Expect = 0.63
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 170 CFAYVDDILVYSRDALQHAAHLRTLFKRLKITESLLIQQNAC 295
C Y+DDI+V+S +H L +F++L +L +Q + C
Sbjct: 323 CLVYLDDIIVFSTSLEEHLQSLEAVFEKLS-QANLKLQLDKC 363
>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
Drosophila retrotransposon412 genome. ).
Length = 1237
Score = 68.1 bits (159), Expect = 1e-11
Identities = 27/75 (36%), Positives = 44/75 (58%)
Frame = +1
Query: 244 FQAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRF 423
F +Y + ++P KC F EVTFLG++ + G P ++ ++++P+P RRF
Sbjct: 494 FGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRF 553
Query: 424 IGMVNYYRRFLRNAA 468
+ NYYRRF++N A
Sbjct: 554 VAFCNYYRRFIKNFA 568
Score = 31.5 bits (68), Expect = 1.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 525 PITWTPELEECFNACKDSLSSAALVAHPLPNAELGLFTDASSSHVGA 665
P WT E ++ F K L + L+ +P + E + TDAS GA
Sbjct: 583 PFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGA 629
Score = 31.1 bits (67), Expect = 1.4
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 6 IDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFI 152
+DL+ + QI + T+ T G Y F + FGL+ A +FQR +
Sbjct: 409 LDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMM 457
>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
DNA polymerase protein.
Length = 1000
Score = 68.1 bits (159), Expect = 1e-11
Identities = 27/75 (36%), Positives = 44/75 (58%)
Frame = +1
Query: 244 FQAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRF 423
F +Y + ++P KC F EVTFLG++ + G P ++ ++++P+P RRF
Sbjct: 257 FGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRF 316
Query: 424 IGMVNYYRRFLRNAA 468
+ NYYRRF++N A
Sbjct: 317 VAFCNYYRRFIKNFA 331
Score = 31.5 bits (68), Expect = 1.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 525 PITWTPELEECFNACKDSLSSAALVAHPLPNAELGLFTDASSSHVGA 665
P WT E ++ F K L + L+ +P + E + TDAS GA
Sbjct: 346 PFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGA 392
Score = 31.1 bits (67), Expect = 1.4
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 6 IDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFI 152
+DL+ + QI + T+ T G Y F + FGL+ A +FQR +
Sbjct: 172 LDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMM 220
>AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse
transcriptase protein.
Length = 1217
Score = 67.3 bits (157), Expect = 2e-11
Identities = 26/85 (30%), Positives = 50/85 (58%)
Frame = +1
Query: 244 FQAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRF 423
F+ + + P+K F E+ FLG+ ++ DG +P +I A+K FP P + ++ F
Sbjct: 495 FEKLRAANFKLQPSKSEFLRKEIEFLGHIVTQDGVKPNPNKISAIKKFPCPTNRRAIKSF 554
Query: 424 IGMVNYYRRFLRNAAKLQAPLVNAI 498
+G++ YYR+F+R+ A++ P+ +
Sbjct: 555 LGLLGYYRKFIRDFARITKPMTKQL 579
Score = 56.0 bits (129), Expect = 4e-08
Identities = 26/51 (50%), Positives = 32/51 (62%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFID 155
T+DL + QI + P+DI KTA G YEF M FGL+NA TFQR +D
Sbjct: 409 TLDLTSGFHQIEMNPKDIAKTAFTVEGGHYEFTRMPFGLKNAPATFQRVMD 459
Score = 31.5 bits (68), Expect = 1.1
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 513 KGLTPITWTPELEECFNACKDSLSSAALVAHPLPNAELGLFTDASSSHVGACFNR 677
KG +T + + F CK LS+ ++ HP L TDAS+ +GA ++
Sbjct: 580 KGKRQVTTDKDFVDAFEQCKTLLSNDPILIHPDFEKPFILTTDASNFALGAVLSQ 634
Score = 29.5 bits (63), Expect = 4.4
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +2
Query: 170 CFAYVDDILVYSRDALQHAAHLRTLFKRLK 259
C Y+DDI+++S +H ++ +F++L+
Sbjct: 470 CLFYLDDIIIFSPSLQKHLLDIKMVFEKLR 499
>X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein (
Drosophila melanogastercopia-like element 17.6. ).
Length = 1058
Score = 65.7 bits (153), Expect = 6e-11
Identities = 26/85 (30%), Positives = 50/85 (58%)
Frame = +1
Query: 244 FQAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRF 423
F+ + + + KC F E TFLG+ ++ DG +P E+I+A++ +P+P + ++ F
Sbjct: 386 FEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAF 445
Query: 424 IGMVNYYRRFLRNAAKLQAPLVNAI 498
+G+ YYR+F+ N A + P+ +
Sbjct: 446 LGLTGYYRKFIPNFADIAKPMTKCL 470
Score = 55.6 bits (128), Expect = 6e-08
Identities = 26/52 (50%), Positives = 34/52 (65%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFIDE 158
TIDL K + QI + PE + KTA T G YE+ M FGL+NA TFQR +++
Sbjct: 300 TIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMND 351
Score = 30.3 bits (65), Expect = 2.5
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 170 CFAYVDDILVYSRDALQHAAHLRTLFKRLKITESLLIQQNAC 295
C Y+DDI+V+S +H L +F++L +L +Q + C
Sbjct: 361 CLVYLDDIIVFSTSLDEHLQSLGLVFEKL-AKANLKLQLDKC 401
>AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein
protein.
Length = 1150
Score = 65.7 bits (153), Expect = 6e-11
Identities = 26/81 (32%), Positives = 50/81 (61%)
Frame = +1
Query: 244 FQAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRF 423
F+ + D + + KC F E FLG+ ++ +G +P + +A+ +FPLP+T + ++ F
Sbjct: 459 FEKLRDANLKLQLDKCEFMKKETEFLGHIVTTNGIKPNPNKTKAITNFPLPKTPKQIKSF 518
Query: 424 IGMVNYYRRFLRNAAKLQAPL 486
+G+ +YR+F+ N AK+ P+
Sbjct: 519 LGLCGFYRKFIPNFAKIVKPM 539
Score = 51.6 bits (118), Expect = 1e-06
Identities = 25/48 (52%), Positives = 29/48 (60%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQR 146
TIDL K + QI + I KTA T G YE+ M FGL+NA TFQR
Sbjct: 373 TIDLAKGFHQIQMDENSIAKTAFSTKHGHYEYTRMPFGLKNAPATFQR 420
Score = 35.9 bits (79), Expect = 0.051
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 161 YDFCFAYVDDILVYSRDALQHAAHLRTLFKRLKITESLLIQQNAC 295
Y C Y+DDI+VYS +H L+ +F++L+ +L +Q + C
Sbjct: 431 YKDCLVYLDDIIVYSTPLEEHILSLKKVFEKLR-DANLKLQLDKC 474
>AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein.
Length = 1003
Score = 65.3 bits (152), Expect = 7e-11
Identities = 28/73 (38%), Positives = 49/73 (67%)
Frame = +1
Query: 274 INPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFIGMVNYYRRF 453
+N K F +V FLG ++ADG + ++++A+ + P P +V+ L+RF+GM +YYR+F
Sbjct: 312 VNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKF 371
Query: 454 LRNAAKLQAPLVN 492
+++ AK+ PL N
Sbjct: 372 IQDYAKVAKPLTN 384
Score = 50.0 bits (114), Expect = 3e-06
Identities = 25/52 (48%), Positives = 31/52 (59%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFIDE 158
T+DL + QI + DI KTA T G YEF + FGL+NA FQR ID+
Sbjct: 216 TLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDD 267
Score = 30.7 bits (66), Expect = 1.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 170 CFAYVDDILVYSRDALQHAAHLRTLFKRL 256
C+ Y+DDI+V+S D H +LR + L
Sbjct: 277 CYVYIDDIIVFSEDYDTHWKNLRLVLASL 305
Score = 29.1 bits (62), Expect = 5.8
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 525 PITWTPELEECFNACKDSLSSAALVAHPLPNAELGLFTDASSSHVGACFNR 677
PIT + FN K L S+ ++A P L TDAS+ +GA ++
Sbjct: 402 PITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQ 452
>AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein
protein.
Length = 1006
Score = 64.9 bits (151), Expect = 1e-10
Identities = 25/85 (29%), Positives = 53/85 (62%)
Frame = +1
Query: 244 FQAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRF 423
FQA+ + + + KC F + FLG+ +S +G +P E+++A++++PLP + ++ F
Sbjct: 333 FQALSNANLKLQLDKCEFLKHDTYFLGHMVSPEGIRPNPEKLRAIENYPLPTKPKEIKSF 392
Query: 424 IGMVNYYRRFLRNAAKLQAPLVNAI 498
+G+ +YR+F+ + A++ PL +
Sbjct: 393 LGLTGFYRKFIPHFAQIAKPLTTCL 417
Score = 57.6 bits (133), Expect = 1e-08
Identities = 27/52 (51%), Positives = 35/52 (67%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFIDE 158
TIDL+K + QI + PE I KTA T G YE+ M FGL+NA TFQR +++
Sbjct: 247 TIDLIKGFHQIEMDPESIPKTAFTTKTGHYEYTRMPFGLKNAPATFQRCMND 298
Score = 33.5 bits (73), Expect = 0.27
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 170 CFAYVDDILVYSRDALQHAAHLRTLFKRLKITESLLIQQNAC 295
C Y+DDI+V+S +H LR +F+ L +L +Q + C
Sbjct: 308 CMVYLDDIIVFSASLEEHLQSLRAVFQALS-NANLKLQLDKC 348
>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
transcriptase protein.
Length = 1088
Score = 64.5 bits (150), Expect = 1e-10
Identities = 26/85 (30%), Positives = 49/85 (57%)
Frame = +1
Query: 244 FQAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRF 423
F + + K F E FLG+ +S +G +P +I+A+K+FP P + + ++ F
Sbjct: 381 FGRLRSANFKVQLTKSYFLRRETEFLGHIVSQEGVRPNPNKIEAIKNFPCPHSKKSIKSF 440
Query: 424 IGMVNYYRRFLRNAAKLQAPLVNAI 498
+G++ YYR+F+R+ A+L P+ +
Sbjct: 441 LGLLGYYRKFIRDFARLTQPMTQKL 465
Score = 52.0 bits (119), Expect = 7e-07
Identities = 25/51 (49%), Positives = 31/51 (60%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFID 155
T+DL + QI + P+D KTA G YEF M FGL+NA TFQR +D
Sbjct: 295 TLDLASGFHQIEMNPDDTPKTAFTVEGGHYEFIRMPFGLKNAPATFQRVMD 345
Score = 37.9 bits (84), Expect = 0.013
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 170 CFAYVDDILVYSRDALQHAAHLRTLFKRLK 259
C Y+DDI+++S +H HL+T+F RL+
Sbjct: 356 CLVYLDDIIIFSTSLQEHFIHLKTIFGRLR 385
>AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein.
Length = 994
Score = 64.1 bits (149), Expect = 2e-10
Identities = 24/73 (32%), Positives = 42/73 (57%)
Frame = +1
Query: 244 FQAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRF 423
F+ + + ++P KC F EVT+LG++ + G P + + ++ +P+P RRF
Sbjct: 249 FELCRRHNLKLHPGKCSFFMKEVTYLGHKCTDKGILPDDTKYEVIEKYPIPTDADSARRF 308
Query: 424 IGMVNYYRRFLRN 462
+ NYYRRF++N
Sbjct: 309 VAFCNYYRRFIKN 321
Score = 29.5 bits (63), Expect = 4.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 6 IDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQR 146
+DL+ + QI + T+ T G Y F + +GL+ A +FQR
Sbjct: 164 LDLMSGFHQIELEKRYRDITSFSTANGSYRFTRLPYGLKVAPNSFQR 210
Score = 29.1 bits (62), Expect = 5.8
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 534 WTPELEECFNACKDSLSSAALVAHPLPNAELGLFTDASSSHVGA 665
WT E + F K L L+ +P E + TDAS GA
Sbjct: 341 WTAECNDAFEYLKTELMKPTLLQYPDFGKEFCITTDASKQACGA 384
>AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 1065
Score = 64.1 bits (149), Expect = 2e-10
Identities = 26/81 (32%), Positives = 50/81 (61%)
Frame = +1
Query: 244 FQAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRF 423
F + + + + KC F E FLG+ I+ DG +P +I+A+ +FP+P++ + ++ F
Sbjct: 374 FLKLREANLKLQLDKCEFLKKETEFLGHIITTDGIKPNPAKIKAVVNFPIPKSTKEIKSF 433
Query: 424 IGMVNYYRRFLRNAAKLQAPL 486
+G+ +YR+F+ N AK+ P+
Sbjct: 434 LGLCGFYRKFIPNFAKIAKPM 454
Score = 49.2 bits (112), Expect = 5e-06
Identities = 24/48 (50%), Positives = 29/48 (60%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQR 146
TIDL K + QI + I KTA T G +E+ M FGL+NA TFQR
Sbjct: 288 TIDLAKGFHQIQMDENSIAKTAFSTKNGHFEYTRMPFGLKNAPATFQR 335
Score = 37.1 bits (82), Expect = 0.022
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +2
Query: 161 YDFCFAYVDDILVYSRDALQHAAHLRTLFKRLKITESLLIQQNACLVLLRLLFSETEY 334
Y C Y+DDI+VYS +H LR +F +L+ +L +Q + C L ETE+
Sbjct: 346 YKNCLVYLDDIIVYSTSLEEHIMSLRKVFLKLR-EANLKLQLDKC----EFLKKETEF 398
>X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein
protein.
Length = 1053
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/74 (39%), Positives = 43/74 (58%)
Frame = +1
Query: 265 GIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFIGMVNYY 444
G N AKC F V +LG + A +P +I +L P PQTV G+R+FIG+ +Y+
Sbjct: 627 GFTFNLAKCSFLKTTVQYLGYEVRAGEIRPNVRKIASLSSLPPPQTVSGVRQFIGLASYF 686
Query: 445 RRFLRNAAKLQAPL 486
R+F+ ++L PL
Sbjct: 687 RKFVSGFSQLMKPL 700
>AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p
protein.
Length = 825
Score = 63.7 bits (148), Expect = 2e-10
Identities = 27/75 (36%), Positives = 42/75 (56%)
Frame = +1
Query: 244 FQAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRF 423
F+ + ++P KC F EVTFLG++ + G P + A++ +P+P RRF
Sbjct: 388 FELCRKNNLKLHPDKCSFFMSEVTFLGHKCTDKGILPDDTKYDAIQRYPVPTDADSARRF 447
Query: 424 IGMVNYYRRFLRNAA 468
+ NYYRRF++N A
Sbjct: 448 VAFCNYYRRFIQNFA 462
Score = 32.7 bits (71), Expect = 0.47
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 6 IDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFIDEA 161
+DL+ + QI + + T+ T G Y F + +GL+ A +FQR + A
Sbjct: 303 LDLMSGFHQIELEEDSRNITSFSTSSGSYRFTRLPYGLKIAPNSFQRMMTMA 354
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 534 WTPELEECFNACKDSLSSAALVAHPLPNAELGLFTDASSSHVGA 665
WT + + F K L + L+ +P + E + TDAS GA
Sbjct: 480 WTADCQHAFEHLKKQLMNPTLLKYPDFSKEFCIITDASKEACGA 523
>X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein.
Length = 1494
Score = 62.9 bits (146), Expect = 4e-10
Identities = 26/81 (32%), Positives = 50/81 (61%)
Frame = +1
Query: 244 FQAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRF 423
F+ + + + + KC F + +LG I+ DG P + I+A+K+FP+P V ++ F
Sbjct: 891 FKRLVENKLELRIDKCEFMQSSIKYLGFIINKDGIMPNDKGIEAIKNFPIPNNVHTVQSF 950
Query: 424 IGMVNYYRRFLRNAAKLQAPL 486
+G+ +Y+RRF+++ ++L PL
Sbjct: 951 LGLCSYFRRFIKDFSRLAKPL 971
Score = 47.6 bits (108), Expect = 2e-05
Identities = 24/56 (42%), Positives = 34/56 (60%)
Frame = +3
Query: 6 IDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFIDEATIFA 173
+DL + + V E I T+ +TP G YE+ M FGL+NA FQRF+++ IFA
Sbjct: 805 LDLKNGFFHVHVKKESIKYTSFVTPLGQYEWLRMPFGLKNAPSVFQRFVNK--IFA 858
>X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein (
Drosophila melanogastertransposable element 297. ).
Length = 1059
Score = 62.5 bits (145), Expect = 5e-10
Identities = 27/102 (26%), Positives = 55/102 (53%)
Frame = +1
Query: 244 FQAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRF 423
F + D + + KC F E FLG+ ++ DG +P +++A+ +P+P + +R F
Sbjct: 385 FTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAF 444
Query: 424 IGMVNYYRRFLRNAAKLQAPLVNAIVATEVKVSHRSLGHLSS 549
+G+ YYR+F+ N A + P+ + + K+ + L ++ +
Sbjct: 445 LGLTGYYRKFIPNYADIAKPMTSCL-KKRTKIDTQKLEYIEA 485
Score = 52.8 bits (121), Expect = 4e-07
Identities = 27/48 (56%), Positives = 30/48 (62%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQR 146
TIDL K + QI + E I KTA T G YE+ M FGLRNA TFQR
Sbjct: 299 TIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQR 346
Score = 30.3 bits (65), Expect = 2.5
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 170 CFAYVDDILVYSRDALQHAAHLRTLFKRLKITESLLIQQNAC 295
C Y+DDI+++S +H ++ +F +L +L +Q + C
Sbjct: 360 CLVYLDDIIIFSTSLTEHLNSIQLVFTKL-ADANLKLQLDKC 400
>AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 1013
Score = 59.7 bits (138), Expect = 4e-09
Identities = 30/96 (31%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Frame = +1
Query: 247 QAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFI 426
+++ D + I+ K F V+FLG ++ +G E+++A+K+FP P+ V +R F+
Sbjct: 339 KSLYDANMRISAEKSRFFKKSVSFLGFIVTNNGAATDPEKVKAIKEFPEPKNVFEVRSFL 398
Query: 427 GMVNYYRRFLRNAAKLQAPLVNAIVATEVKVS-HRS 531
G+ +YYR F+++ A + P+ + + VS HRS
Sbjct: 399 GLASYYRCFIKDFASIARPISDILKGENGSVSRHRS 434
Score = 51.6 bits (118), Expect = 1e-06
Identities = 26/52 (50%), Positives = 30/52 (57%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFIDE 158
T+DL Y QI +A D KTA G YEF + FGLRNA FQR ID+
Sbjct: 252 TLDLKSGYHQITLAERDREKTAFAVNGGKYEFRRLPFGLRNAASIFQRTIDD 303
Score = 35.9 bits (79), Expect = 0.051
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 167 FCFAYVDDILVYSRDALQHAAHLRTLFKRL 256
FC+ YVDD++++S D H H+ + K L
Sbjct: 312 FCYVYVDDVIIFSEDENDHVKHVDWVLKSL 341
>AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein
protein.
Length = 1037
Score = 59.3 bits (137), Expect = 5e-09
Identities = 23/82 (28%), Positives = 47/82 (57%)
Frame = +1
Query: 244 FQAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRF 423
F + + + KC F E+ FLG+ I+++G +P ++I A+ LP + ++ F
Sbjct: 311 FSCLSKANLKLQSDKCEFAREEIEFLGHTINSEGLKPSQKKIDAICKINLPTNQKQIKSF 370
Query: 424 IGMVNYYRRFLRNAAKLQAPLV 489
+G+ Y RR++++ +K+ PL+
Sbjct: 371 LGITGYLRRYIKDYSKIAQPLI 392
Score = 53.2 bits (122), Expect = 3e-07
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFID 155
T+DL K + QI + +D+ KTA T G YEF M FGLRNA TFQR ++
Sbjct: 225 TLDLAKGFYQIEMDNKDVHKTAFSTTSGHYEFLRMPFGLRNAPSTFQRLMN 275
Score = 37.9 bits (84), Expect = 0.013
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 167 FCFAYVDDILVYSRDALQHAAHLRTLFKRLKITESLLIQQNAC 295
FC Y+DDIL++S++ +H HL +F L +L +Q + C
Sbjct: 285 FCIVYMDDILIFSKNIGEHVNHLSCIFSCLS-KANLKLQSDKC 326
>X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D.
melanogaster retrotransposongypsy gene fragment for
reverse transcriptase-like enzyme.).
Length = 930
Score = 58.4 bits (135), Expect = 8e-09
Identities = 29/98 (29%), Positives = 54/98 (55%)
Frame = +1
Query: 259 DYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFIGMVN 438
D + ++ K F V +LG +S DGT+ E+++A++++P P V +R F+G+ +
Sbjct: 346 DANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLAS 405
Query: 439 YYRRFLRNAAKLQAPLVNAIVATEVKVSHRSLGHLSSK 552
YYR F+++ A + P+ + + VS H+S K
Sbjct: 406 YYRVFIKDFAAIARPITDILKGENGSVSK----HMSKK 439
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFIDE 158
T+DL Y QI +A D KT+ G YEF + FGLRNA FQR +D+
Sbjct: 255 TLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDD 306
Score = 35.1 bits (77), Expect = 0.089
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Frame = +2
Query: 134 NVSKIYRRSYD---------FCFAYVDDILVYSRDALQHAAHLRTLFKRL 256
N S I++R+ D C+ YVDD++++S + H H+ T+ K L
Sbjct: 295 NASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCL 344
>M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protein
protein.
Length = 1010
Score = 58.4 bits (135), Expect = 8e-09
Identities = 29/98 (29%), Positives = 54/98 (55%)
Frame = +1
Query: 259 DYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFIGMVN 438
D + ++ K F V +LG +S DGT+ E+++A++++P P V +R F+G+ +
Sbjct: 341 DANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLAS 400
Query: 439 YYRRFLRNAAKLQAPLVNAIVATEVKVSHRSLGHLSSK 552
YYR F+++ A + P+ + + VS H+S K
Sbjct: 401 YYRVFIKDFAAIARPITDILKGENGSVSK----HMSKK 434
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFIDE 158
T+DL Y QI +A D KT+ G YEF + FGLRNA FQR +D+
Sbjct: 250 TLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDD 301
Score = 35.1 bits (77), Expect = 0.089
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Frame = +2
Query: 134 NVSKIYRRSYD---------FCFAYVDDILVYSRDALQHAAHLRTLFKRL 256
N S I++R+ D C+ YVDD++++S + H H+ T+ K L
Sbjct: 290 NASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCL 339
>EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 58.4 bits (135), Expect = 8e-09
Identities = 29/98 (29%), Positives = 54/98 (55%)
Frame = +1
Query: 259 DYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFIGMVN 438
D + ++ K F V +LG +S DGT+ E+++A++++P P V +R F+G+ +
Sbjct: 376 DANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLAS 435
Query: 439 YYRRFLRNAAKLQAPLVNAIVATEVKVSHRSLGHLSSK 552
YYR F+++ A + P+ + + VS H+S K
Sbjct: 436 YYRVFIKDFAAIARPITDILKGENGSVSK----HMSKK 469
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFIDE 158
T+DL Y QI +A D KT+ G YEF + FGLRNA FQR +D+
Sbjct: 285 TLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDD 336
Score = 35.1 bits (77), Expect = 0.089
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Frame = +2
Query: 134 NVSKIYRRSYD---------FCFAYVDDILVYSRDALQHAAHLRTLFKRL 256
N S I++R+ D C+ YVDD++++S + H H+ T+ K L
Sbjct: 325 NASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCL 374
>DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 58.4 bits (135), Expect = 8e-09
Identities = 29/98 (29%), Positives = 54/98 (55%)
Frame = +1
Query: 259 DYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFIGMVN 438
D + ++ K F V +LG +S DGT+ E+++A++++P P V +R F+G+ +
Sbjct: 341 DANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLAS 400
Query: 439 YYRRFLRNAAKLQAPLVNAIVATEVKVSHRSLGHLSSK 552
YYR F+++ A + P+ + + VS H+S K
Sbjct: 401 YYRVFIKDFAAIARPITDILKGENGSVSK----HMSKK 434
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFIDE 158
T+DL Y QI +A D KT+ G YEF + FGLRNA FQR +D+
Sbjct: 250 TLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDD 301
Score = 35.1 bits (77), Expect = 0.089
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Frame = +2
Query: 134 NVSKIYRRSYD---------FCFAYVDDILVYSRDALQHAAHLRTLFKRL 256
N S I++R+ D C+ YVDD++++S + H H+ T+ K L
Sbjct: 290 NASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCL 339
>DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 58.4 bits (135), Expect = 8e-09
Identities = 29/98 (29%), Positives = 54/98 (55%)
Frame = +1
Query: 259 DYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFIGMVN 438
D + ++ K F V +LG +S DGT+ E+++A++++P P V +R F+G+ +
Sbjct: 341 DANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLAS 400
Query: 439 YYRRFLRNAAKLQAPLVNAIVATEVKVSHRSLGHLSSK 552
YYR F+++ A + P+ + + VS H+S K
Sbjct: 401 YYRVFIKDFAAIARPITDILKGENGSVSK----HMSKK 434
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFIDE 158
T+DL Y QI +A D KT+ G YEF + FGLRNA FQR +D+
Sbjct: 250 TLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDD 301
Score = 35.1 bits (77), Expect = 0.089
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Frame = +2
Query: 134 NVSKIYRRSYD---------FCFAYVDDILVYSRDALQHAAHLRTLFKRL 256
N S I++R+ D C+ YVDD++++S + H H+ T+ K L
Sbjct: 290 NASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCL 339
>AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol
protein.
Length = 1463
Score = 58.4 bits (135), Expect = 8e-09
Identities = 29/98 (29%), Positives = 54/98 (55%)
Frame = +1
Query: 259 DYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFIGMVN 438
D + ++ K F V +LG +S DGT+ E+++A++++P P V +R F+G+ +
Sbjct: 794 DANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLAS 853
Query: 439 YYRRFLRNAAKLQAPLVNAIVATEVKVSHRSLGHLSSK 552
YYR F+++ A + P+ + + VS H+S K
Sbjct: 854 YYRVFIKDFAAIARPITDILKGENGSVSK----HMSKK 887
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFIDE 158
T+DL Y QI +A D KT+ G YEF + FGLRNA FQR +D+
Sbjct: 703 TLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDD 754
Score = 35.1 bits (77), Expect = 0.089
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Frame = +2
Query: 134 NVSKIYRRSYD---------FCFAYVDDILVYSRDALQHAAHLRTLFKRL 256
N S I++R+ D C+ YVDD++++S + H H+ T+ K L
Sbjct: 743 NASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCL 792
>EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 57.2 bits (132), Expect = 2e-08
Identities = 29/98 (29%), Positives = 53/98 (54%)
Frame = +1
Query: 259 DYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFIGMVN 438
D + ++ K F V +LG +S DGT E+++A++++P P V +R F+G+ +
Sbjct: 376 DANMRVSQEKTRFFTESVEYLGFIVSKDGTISDPEKVKAIQEYPEPDCVYKVRSFLGLAS 435
Query: 439 YYRRFLRNAAKLQAPLVNAIVATEVKVSHRSLGHLSSK 552
YYR F+++ A + P+ + + VS H+S K
Sbjct: 436 YYRVFIKDFAAIARPITDILKGENGSVSK----HMSKK 469
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFIDE 158
T+DL Y QI +A D KT+ G YEF + FGLRNA FQR +D+
Sbjct: 285 TLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDD 336
Score = 35.1 bits (77), Expect = 0.089
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Frame = +2
Query: 134 NVSKIYRRSYD---------FCFAYVDDILVYSRDALQHAAHLRTLFKRL 256
N S I++R+ D C+ YVDD++++S + H H+ T+ K L
Sbjct: 325 NASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCL 374
>AF541947-2|AAN34648.1| 407|Drosophila melanogaster truncated pol
protein protein.
Length = 407
Score = 54.0 bits (124), Expect = 2e-07
Identities = 26/51 (50%), Positives = 30/51 (58%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFID 155
TIDL + QI + P D KTA G YEF M FGL+NA TFQR +D
Sbjct: 277 TIDLASGFHQIQMNPRDASKTAFTVENGHYEFTRMPFGLKNAPATFQRVMD 327
Score = 35.9 bits (79), Expect = 0.051
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +2
Query: 170 CFAYVDDILVYSRDALQHAAHLRTLFKRLKITESLLIQQNACLVL 304
C Y+DDI+V+S +H A ++++F +L+ +L IQ + C L
Sbjct: 338 CLVYLDDIIVFSPSLQKHIADIKSVFTKLQ-NANLKIQPSKCSFL 381
Score = 35.5 bits (78), Expect = 0.067
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +1
Query: 244 FQAIEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQAL 378
F +++ + I P+KC F E+ FLG+ ++ +G +P +IQ +
Sbjct: 363 FTKLQNANLKIQPSKCSFLRKEIDFLGHIVTQEGVKPNPLKIQTI 407
>Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia
polyprotein protein.
Length = 1333
Score = 52.4 bits (120), Expect = 5e-07
Identities = 23/80 (28%), Positives = 43/80 (53%)
Frame = +1
Query: 259 DYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFIGMVN 438
++G+ I KC F + FLG+ I P E+ A+ F PQ V+ ++ F+G+
Sbjct: 668 EFGLKIKWKKCNFMQRRIHFLGHIIEGGQICPGKEKTSAVNSFGTPQNVKAVQGFLGLTG 727
Query: 439 YYRRFLRNAAKLQAPLVNAI 498
++R+F+ A++ PL + +
Sbjct: 728 FFRKFIPGYAQIARPLTDLL 747
Score = 37.1 bits (82), Expect = 0.022
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFI 152
T+DL + + V TA +T GL+EFN FG +N+ F RF+
Sbjct: 576 TMDLQNGFFHVAVEEASKPYTAFVTREGLFEFNKAPFGFKNSPAAFIRFV 625
>AY050234-1|AAK84933.1| 1026|Drosophila melanogaster SD02026p
protein.
Length = 1026
Score = 52.4 bits (120), Expect = 5e-07
Identities = 23/80 (28%), Positives = 43/80 (53%)
Frame = +1
Query: 259 DYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFIGMVN 438
++G+ I KC F + FLG+ I P E+ A+ F PQ V+ ++ F+G+
Sbjct: 362 EFGLKIKWKKCNFMQRRIHFLGHIIEGGQICPGKEKTSAVNSFGTPQNVKAVQGFLGLTG 421
Query: 439 YYRRFLRNAAKLQAPLVNAI 498
++R+F+ A++ PL + +
Sbjct: 422 FFRKFIPGYAQIARPLTDLL 441
Score = 37.1 bits (82), Expect = 0.022
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFI 152
T+DL + + V TA +T GL+EFN FG +N+ F RF+
Sbjct: 270 TMDLQNGFFHVAVEEASKPYTAFVTREGLFEFNKAPFGFKNSPAAFIRFV 319
>U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse
transcriptase polyprotein protein.
Length = 1041
Score = 49.6 bits (113), Expect = 4e-06
Identities = 22/83 (26%), Positives = 44/83 (53%)
Frame = +1
Query: 274 INPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFIGMVNYYRRF 453
++ K F V +LG +S+ G +++A++ + P + +R F+G+ +YYR F
Sbjct: 377 VSKEKSFFFKESVEYLGFMVSSGGITTSPSKVEAIQKYNQPTNLFSVRSFLGLASYYRCF 436
Query: 454 LRNAAKLQAPLVNAIVATEVKVS 522
+++ A + PL + + KVS
Sbjct: 437 IKDFASIARPLTDILKGENGKVS 459
Score = 49.2 bits (112), Expect = 5e-06
Identities = 25/52 (48%), Positives = 32/52 (61%)
Frame = +3
Query: 3 TIDLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFIDE 158
T+DL A+ QI +A +D KTA G YEF + FGL+NA FQR ID+
Sbjct: 281 TLDLKSAFHQILLAEKDRAKTAFSVGNGKYEFCRLPFGLKNAPSIFQRAIDD 332
>X52759-1|CAA36970.1| 365|Drosophila melanogaster glutamine
synthetase protein.
Length = 365
Score = 28.7 bits (61), Expect = 7.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 560 KAFFELRCPSDRCETFTSVATIALT 486
K +FE RCPS C+ ++ V I T
Sbjct: 336 KGYFEDRCPSSNCDPYSVVEAILRT 360
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,063,294
Number of Sequences: 53049
Number of extensions: 575808
Number of successful extensions: 1595
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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