Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120016.Seq
(678 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 62 4e-10
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 62 4e-10
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 62 4e-10
L23651-2|ABA54424.1| 124|Caenorhabditis elegans Hypothetical pr... 32 0.43
Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical pr... 31 1.00
AF067607-11|AAM81119.1| 412|Caenorhabditis elegans Innexin prot... 29 4.0
AF067607-10|AAM81118.1| 436|Caenorhabditis elegans Innexin prot... 29 4.0
AC024859-27|AAK29978.4| 337|Caenorhabditis elegans Hypothetical... 28 7.0
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 62.1 bits (144), Expect = 4e-10
Identities = 27/84 (32%), Positives = 48/84 (57%)
Frame = +1
Query: 253 IEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFIGM 432
I G+ + +KC EV +LG++++ DG + + +K F P V+ L+ F+G+
Sbjct: 1205 IRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGL 1264
Query: 433 VNYYRRFLRNAAKLQAPLVNAIVA 504
V YYR+F+ N A++ + L + I A
Sbjct: 1265 VGYYRKFILNFAQIASSLTSLISA 1288
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 173 FAYVDDILVYSRDALQHAAHLRTLFKRLK 259
F YVDD+L+ S+D QH ++ R++
Sbjct: 1178 FVYVDDLLIASKDMEQHLQDVKEALTRIR 1206
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 9 DLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFIDE 158
D++ + QIP+ + TA L+E+N + FGL + FQ ++E
Sbjct: 1118 DMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEE 1167
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 62.1 bits (144), Expect = 4e-10
Identities = 27/84 (32%), Positives = 48/84 (57%)
Frame = +1
Query: 253 IEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFIGM 432
I G+ + +KC EV +LG++++ DG + + +K F P V+ L+ F+G+
Sbjct: 1108 IRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGL 1167
Query: 433 VNYYRRFLRNAAKLQAPLVNAIVA 504
V YYR+F+ N A++ + L + I A
Sbjct: 1168 VGYYRKFILNFAQIASSLTSLISA 1191
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 173 FAYVDDILVYSRDALQHAAHLRTLFKRLK 259
F YVDD+L+ S+D QH ++ R++
Sbjct: 1081 FVYVDDLLIASKDMEQHLQDVKEALTRIR 1109
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 9 DLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFIDE 158
D++ + QIP+ + TA L+E+N + FGL + FQ ++E
Sbjct: 1021 DMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEE 1070
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 62.1 bits (144), Expect = 4e-10
Identities = 27/84 (32%), Positives = 48/84 (57%)
Frame = +1
Query: 253 IEDYGIVINPAKCVFGAPEVTFLGNRISADGTQPPSERIQALKDFPLPQTVQGLRRFIGM 432
I G+ + +KC EV +LG++++ DG + + +K F P V+ L+ F+G+
Sbjct: 1119 IRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGL 1178
Query: 433 VNYYRRFLRNAAKLQAPLVNAIVA 504
V YYR+F+ N A++ + L + I A
Sbjct: 1179 VGYYRKFILNFAQIASSLTSLISA 1202
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 173 FAYVDDILVYSRDALQHAAHLRTLFKRLK 259
F YVDD+L+ S+D QH ++ R++
Sbjct: 1092 FVYVDDLLIASKDMEQHLQDVKEALTRIR 1120
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 9 DLVKAYQQIPVAPEDICKTAIITPFGLYEFNYMTFGLRNAGQTFQRFIDE 158
D++ + QIP+ + TA L+E+N + FGL + FQ ++E
Sbjct: 1032 DMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEE 1081
>L23651-2|ABA54424.1| 124|Caenorhabditis elegans Hypothetical
protein C29E4.14 protein.
Length = 124
Score = 31.9 bits (69), Expect = 0.43
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -2
Query: 230 VQHVEEHHGNTLICRQRTQSKNRSFVY 150
++H+++H+GN + + T SK+R F Y
Sbjct: 33 IEHLKDHYGNKIEIEKHTSSKDRKFYY 59
>Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical
protein F47B8.5 protein.
Length = 579
Score = 30.7 bits (66), Expect = 1.00
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +2
Query: 218 QHAAHLRTLFKRLKITESLLIQQNACLVLLRLLFSETEYPPTEHNHHQSAFKL*KIFLYH 397
+ H+R +F ++K+T+ +I + CL L F+ + T H H + K +
Sbjct: 289 EEVIHMRIVFAKIKLTKPAIIFEAICLFSLFSFFNFITF-STSHFHFHNKIKF--LLEGE 345
Query: 398 RLYKDSVVSLG 430
+YK ++ G
Sbjct: 346 TVYKQKIIENG 356
>AF067607-11|AAM81119.1| 412|Caenorhabditis elegans Innexin protein
18, isoform b protein.
Length = 412
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +2
Query: 134 NVSKIYR-RSYDFCFAYVDDILVYSRD--ALQHAAHLRTLFK 250
NV + R ++ D ++DD L+Y RD A +H+ ++ +FK
Sbjct: 150 NVDPVVRDKTVDIVARHIDDALMYQRDHGARRHSVYIFAIFK 191
>AF067607-10|AAM81118.1| 436|Caenorhabditis elegans Innexin protein
18, isoform a protein.
Length = 436
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +2
Query: 134 NVSKIYR-RSYDFCFAYVDDILVYSRD--ALQHAAHLRTLFK 250
NV + R ++ D ++DD L+Y RD A +H+ ++ +FK
Sbjct: 150 NVDPVVRDKTVDIVARHIDDALMYQRDHGARRHSVYIFAIFK 191
>AC024859-27|AAK29978.4| 337|Caenorhabditis elegans Hypothetical
protein Y71H2AM.1 protein.
Length = 337
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 484 LVNAIVATEVKVSHRSLGHLSSKNALMPVKIACHLQL 594
L + A ++++ R++ H SSK L+ + C+L+L
Sbjct: 235 LQETVFAMLIEITERAMAHTSSKELLIVGGVGCNLRL 271
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,570,442
Number of Sequences: 27780
Number of extensions: 291430
Number of successful extensions: 786
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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