BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120009.Seq (721 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 1.7 AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein. 23 2.9 AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 23 3.8 DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 22 5.1 DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 22 5.1 AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 8.9 >DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine receptor alpha3subunit protein. Length = 566 Score = 23.8 bits (49), Expect = 1.7 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +3 Query: 321 KLIAFTSAFINALHKKTPWTLNSILGIFLKNAIM-TNVW 434 KL+ +AL K L+ ++ + LKN IM TN+W Sbjct: 38 KLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW 76 >AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein. Length = 147 Score = 23.0 bits (47), Expect = 2.9 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = +2 Query: 680 KRHVAHDRVKQRV 718 KRH+A D+VK RV Sbjct: 26 KRHLAQDKVKVRV 38 >AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein protein. Length = 352 Score = 22.6 bits (46), Expect = 3.8 Identities = 10/41 (24%), Positives = 18/41 (43%) Frame = +3 Query: 69 PTCTTECQICLEKIDDNGGIVAMPDTGMLNLEKMFHEQCIQ 191 P C++ +D G ++ PD+ L +M H+ Q Sbjct: 135 PIVYASCKLQAAAVDHQGSVLDGPDSPPLVESQMHHQMHTQ 175 >DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. Length = 828 Score = 22.2 bits (45), Expect = 5.1 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%) Frame = +3 Query: 540 LDLCASVKLT----PFKPMRPPKPMQCWIHP 620 LD+ KLT + P+ P+ WIHP Sbjct: 515 LDMLVLPKLTLEVEEWNPLTDTVPIHTWIHP 545 >DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex determiner protein. Length = 185 Score = 22.2 bits (45), Expect = 5.1 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = +1 Query: 259 KNARGMQRDAS--RNQRVYRRSRN*LRLQARLSTRYTRRR 372 +N+R +R+ + +N+R YR+ R + ++R T R R Sbjct: 37 RNSRSREREQNSYKNEREYRKYRETSKERSRDRTERERSR 76 >AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor protein. Length = 1770 Score = 21.4 bits (43), Expect = 8.9 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 642 TRPRNNYSDPDNENDMLHMTVLNSV 716 T PR N PDN N+ LH+ SV Sbjct: 1473 TYPRIN---PDNHNEKLHIPKDKSV 1494 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 193,027 Number of Sequences: 438 Number of extensions: 4188 Number of successful extensions: 12 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 22292145 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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