Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120008.Seq
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 142 6e-35
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 100 4e-22
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 93 3e-20
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 83 3e-17
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 73 5e-14
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 68 1e-12
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 62 5e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 58 9e-10
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 56 6e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 55 1e-08
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 54 2e-08
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 54 3e-08
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 54 3e-08
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 52 1e-07
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 49 7e-07
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 47 3e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 47 3e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 44 2e-05
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 44 3e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 42 6e-05
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 40 4e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 39 6e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 39 8e-04
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.36
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.36
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 27 2.5
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 26 5.8
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 26 5.8
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 142 bits (343), Expect = 6e-35
Identities = 63/84 (75%), Positives = 75/84 (89%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GRL+D L+ TNL+R TYLVLDEADRMLDMGFEPQIRKI++QIRPDRQT+M+SATWPKE
Sbjct: 254 GRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKE 313
Query: 437 VKKLAEDYLGDYIQINIGSLQLSA 508
V++LA DYL DYIQ+ +GSL L+A
Sbjct: 314 VQRLARDYLNDYIQVTVGSLDLAA 337
Score = 121 bits (292), Expect = 8e-29
Identities = 59/84 (70%), Positives = 65/84 (77%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ FG +S +RNTC
Sbjct: 169 GSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTC 228
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
V+GG P+ Q RDL RGVEI IAT
Sbjct: 229 VYGGVPRGPQIRDLIRGVEICIAT 252
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +1
Query: 508 NHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKR 642
+HNI QIV++ +K +L ++E+ + ++ K +IF TKR
Sbjct: 338 SHNIKQIVEVVDNADKRARLGKDIEEVLKDRD--NKVLIFTGTKR 380
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 99.5 bits (237), Expect = 4e-22
Identities = 49/99 (49%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Frame = +2
Query: 221 LGEGSRNSHCYSGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 391
L G+ C GR+ID L TNL RCTYLVLDEADRM D+GFEPQ+ +II IR
Sbjct: 538 LKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIR 597
Query: 392 PDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSA 508
PDRQT+++SAT+P+ ++ LA L ++I +G + A
Sbjct: 598 PDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVA 636
Score = 92.7 bits (220), Expect = 4e-20
Identities = 41/84 (48%), Positives = 58/84 (69%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI + F +R C
Sbjct: 465 GSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACC 524
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
+GGAP ++Q DL+RG EIV+ T
Sbjct: 525 AYGGAPIKDQIADLKRGAEIVVCT 548
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 93.1 bits (221), Expect = 3e-20
Identities = 43/82 (52%), Positives = 62/82 (75%), Gaps = 4/82 (4%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR----PDRQTLMWSAT 424
GRL+D +++G +L +LVLDEADRMLDMGFEPQIR I+E +RQTLM+SAT
Sbjct: 314 GRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSAT 373
Query: 425 WPKEVKKLAEDYLGDYIQINIG 490
+P++++ LA D+L DY+ +++G
Sbjct: 374 FPRDIQLLARDFLKDYVFLSVG 395
Score = 54.0 bits (124), Expect = 2e-08
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 13/97 (13%)
Frame = +3
Query: 3 GSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQVA 143
GSGKT ++ P + + + P P+ + G P L+LAPTREL QI + +
Sbjct: 216 GSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEES 275
Query: 144 ADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 254
F + S+VR V+GGA R Q R +++G +++ AT
Sbjct: 276 RKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSAT 312
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 547 HEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKLRT 654
H ++++ L +I + P T+IFVETKR T
Sbjct: 410 HVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADT 445
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 83.4 bits (197), Expect = 3e-17
Identities = 45/90 (50%), Positives = 59/90 (65%), Gaps = 6/90 (6%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD------RQTLMWS 418
GRL+D + G+ + + YLVLDEADRMLD GFE IR II PD RQT+ +S
Sbjct: 294 GRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISH-TPDPTRNGSRQTVFFS 352
Query: 419 ATWPKEVKKLAEDYLGDYIQINIGSLQLSA 508
ATWP+ V+ LA +L D ++I IGS +L+A
Sbjct: 353 ATWPESVRALAATFLKDPVKITIGSDELAA 382
Score = 53.2 bits (122), Expect = 3e-08
Identities = 31/84 (36%), Positives = 48/84 (57%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKT+A+ +PA+ ++N + P LV++PTRELA Q + + ++
Sbjct: 212 GSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVV 269
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
V+GGAPK EQAR + ++I T
Sbjct: 270 VYGGAPKSEQAR-AAKNASVIIGT 292
Score = 28.7 bits (61), Expect = 0.82
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 508 NHNILQIVDICQE-HEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKLRTYQGT 666
+ NI QIV+I + KE L+ LL++ S K +IFV K++ +GT
Sbjct: 383 SQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGT 436
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 72.5 bits (170), Expect = 5e-14
Identities = 40/87 (45%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTSYVR 173
GSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ F R
Sbjct: 296 GSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFR 355
Query: 174 NTCVFGGAPKREQARDLERGVEIVIAT 254
V GG EQ+ + +G IV+AT
Sbjct: 356 CVSVVGGHAFEEQSFQMSQGAHIVVAT 382
Score = 68.9 bits (161), Expect = 6e-13
Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 19/99 (19%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD------------- 397
GRL+D LE+ L +CTY+V+DEADRMLDMGFE + KI+ +
Sbjct: 384 GRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATA 443
Query: 398 ------RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL 496
RQT+M+SAT P V LA+ YL + + + IG++
Sbjct: 444 NSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNI 482
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 67.7 bits (158), Expect = 1e-12
Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
Frame = +2
Query: 248 CYSGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 421
C GRL+D LE KG + L+ YL++DEADR+LDM F P I KI++ I +R+TL++SA
Sbjct: 170 CTPGRLMDHLENTKGFS-LKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSA 228
Query: 422 TWPKEVKKLAEDYLGDYIQINIGSLQLSAITTFFKL*IF 538
T +V+KL L +++ + S + S + T + +F
Sbjct: 229 TMTSKVEKLQRASLHQPVRVAVSS-KFSTVDTLIQRYLF 266
Score = 50.4 bits (115), Expect = 2e-07
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 179
GSGKT A+ LP I + NN P A+VLAPTRELA QI + G + VR+
Sbjct: 93 GSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSV 146
Query: 180 CVFGGAPKREQARDLERGVEIVIAT 254
+ GG QA L + +++ T
Sbjct: 147 VIVGGMDMVTQAVALSKKPHVLVCT 171
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 62.5 bits (145), Expect = 5e-11
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GR++D KG + CT V+DEAD++L F P I +++ +RQ ++SAT+P
Sbjct: 171 GRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLI 230
Query: 437 VKKLAEDYLGDYIQINI-GSLQLSAITTFF 523
VK + +L +IN+ L L +T ++
Sbjct: 231 VKNFMDKHLNKPYEINLMDELTLRGVTQYY 260
Score = 44.0 bits (99), Expect = 2e-05
Identities = 27/84 (32%), Positives = 41/84 (48%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
G+GKT A+++P++ ++ + + L+L PTRELA Q QV G V+
Sbjct: 91 GTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNVKVMV 145
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
GG R+ L V IV+ T
Sbjct: 146 TTGGTTLRDDIIRLNDTVHIVVGT 169
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 58.4 bits (135), Expect = 9e-10
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPI--RRGDGPIALVLAPTRELAQQIQQVAADFGH---TSY 167
GSGKTLAY+LP + + P R G A+++APTREL QQI VA + + +
Sbjct: 188 GSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHW 247
Query: 168 VRNTCVFGGAPKREQARDLERGVEIVIAT 254
+ + V GG K+ + + +GV I+I T
Sbjct: 248 IVSCNVIGGEKKKSEKARIRKGVNILIGT 276
Score = 44.8 bits (101), Expect = 1e-05
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 14/89 (15%)
Frame = +2
Query: 257 GRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR------------PD 397
GRL D LE ++ + ++VLDE DR++DMGFE + KI+ + P
Sbjct: 278 GRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPS 337
Query: 398 RQ-TLMWSATWPKEVKKLAEDYLGDYIQI 481
R+ T++ SAT VK+L++ L D + +
Sbjct: 338 RKVTMLCSATMKDTVKRLSDSALKDALYL 366
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 55.6 bits (128), Expect = 6e-09
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +2
Query: 248 CYSGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAT 424
C GRL+ +++ + L+LDEADR+LDMGF + I+ + RQT+++SAT
Sbjct: 166 CTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSAT 225
Query: 425 WPKEVKKLA 451
K VK LA
Sbjct: 226 QTKSVKDLA 234
Score = 45.2 bits (102), Expect = 9e-06
Identities = 30/84 (35%), Positives = 44/84 (52%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 86 GSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRLHSFSAGL 144
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
+ GG +E+ L R + I++ T
Sbjct: 145 IIGGNNYKEEKERLSR-MNILVCT 167
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 54.8 bits (126), Expect = 1e-08
Identities = 31/84 (36%), Positives = 45/84 (53%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKT A+++P I H+ + AL+L+P RELA Q +V DF + +R+
Sbjct: 116 GSGKTAAFVIPMIEHLKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVA 172
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
+ GG EQ L +IV+AT
Sbjct: 173 IVGGVSLEEQFSLLSGKPDIVVAT 196
Score = 53.6 bits (123), Expect = 3e-08
Identities = 26/77 (33%), Positives = 43/77 (55%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GR + + L Y+V DEADR+ +MGF Q+ +I+ + RQTL++SAT P+
Sbjct: 198 GRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRT 257
Query: 437 VKKLAEDYLGDYIQINI 487
+ A+ L D + + +
Sbjct: 258 LVDFAKAGLQDPVLVRL 274
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 54.0 bits (124), Expect = 2e-08
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GR+ D +++ VLDEAD ML GF+ QI I + + P Q ++ SAT P++
Sbjct: 146 GRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQD 205
Query: 437 VKKLAEDYLGDYIQINI--GSLQLSAITTFF 523
V ++ ++ D I+I + L L I F+
Sbjct: 206 VLEVTTKFMRDPIRILVKKDELTLEGIKQFY 236
Score = 50.4 bits (115), Expect = 2e-07
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
G+GKT + + + I+ +++ AL+LAPTRELAQQIQ+V G V
Sbjct: 66 GTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHA 120
Query: 183 VFGGAPKREQARDLERGVEIVIAT--QVD*LISWKRAQPT 296
GG R+ L+ GV +V+ T +V +I +RA PT
Sbjct: 121 CIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQ-RRALPT 159
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 53.6 bits (123), Expect = 3e-08
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 GSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 176
GSGKTLA+++P I ++ P R G G I +++PTRELA QI VA + +
Sbjct: 136 GSGKTLAFLIPTIEMLYALKFKP-RNGTGVI--IISPTRELALQIFGVAKELLKYHHQTF 192
Query: 177 TCVFGGAPKREQARDLERGVEIVIAT 254
V GGA +R +A L +GV +++AT
Sbjct: 193 GIVIGGANRRAEADKLVKGVNLLVAT 218
Score = 50.8 bits (116), Expect = 2e-07
Identities = 30/68 (44%), Positives = 48/68 (70%), Gaps = 3/68 (4%)
Frame = +2
Query: 257 GRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-RPDRQTLMWSATW 427
GRL+D L+ KG + LV+DEADR+L++GFE ++R+I++ + +RQTL++SAT
Sbjct: 220 GRLLDHLQNTKGFV-FRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQ 278
Query: 428 PKEVKKLA 451
+V+ LA
Sbjct: 279 TTKVEDLA 286
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 53.6 bits (123), Expect = 3e-08
Identities = 32/84 (38%), Positives = 44/84 (52%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKT A+ LP I + P G AL+L PTRELA QI + A G +++
Sbjct: 54 GSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLKHAL 108
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
+ GG Q+ DL + +V+AT
Sbjct: 109 IVGGMDMIRQSIDLSKRPHVVVAT 132
Score = 38.7 bits (86), Expect = 8e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Frame = +2
Query: 257 GRLIDFL----EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI--RPDRQTLMWS 418
GRL D + E+ L+R +LV+DEADR+L F + + DRQTL+++
Sbjct: 134 GRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFT 193
Query: 419 ATWPKEVKKL 448
AT +++L
Sbjct: 194 ATVTDAIRQL 203
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 51.6 bits (118), Expect = 1e-07
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Frame = +2
Query: 158 HILCS*HVCVWWCS*KRASPGLGEGSRNSHCYSGRLIDFLEKGTTNLQRCTYLVLDEADR 337
H+ H C+ S L G GR+ D + + + L+LDEAD
Sbjct: 115 HMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADE 174
Query: 338 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI--GSLQLSAI 511
+L+ GF+ QI I + P Q ++ SAT P++V ++ + + ++I + L L +
Sbjct: 175 LLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGL 234
Query: 512 TTFF 523
+F
Sbjct: 235 KQYF 238
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +3
Query: 90 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 254
AL+L+PTRELA QIQ V G V+ GG + L+ G +V T
Sbjct: 92 ALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGT 146
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 48.8 bits (111), Expect = 7e-07
Identities = 29/84 (34%), Positives = 44/84 (52%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKT A+I+P + + +P ++ L+L PTRELA Q VA + +
Sbjct: 306 GSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCL 363
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
GG + Q ++L + +IVIAT
Sbjct: 364 CIGGLSLKLQEQELRKRPDIVIAT 387
Score = 48.0 bits (109), Expect = 1e-06
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 GRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPK 433
GR ID + ++ +V+DEADRML+ GF ++ +II+ RQT+++SAT
Sbjct: 389 GRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTD 448
Query: 434 EVKKLAEDYLGDYIQINIGSLQLSA 508
+V L L +++ + + + +A
Sbjct: 449 KVDDLIRLSLNRPVRVFVDNKKTTA 473
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 46.8 bits (106), Expect = 3e-06
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
G+GKTLA++L A + P +++L+PTRELA QI + A + + +R +
Sbjct: 86 GTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSY 145
Query: 183 VFGGAPKREQARDLERG-VEIVIAT 254
GG K + + RG ++IAT
Sbjct: 146 AIGGNSKMREENAIRRGNANLLIAT 170
Score = 42.3 bits (95), Expect = 6e-05
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCT-YLVLDEADRMLDMGFEPQIRKIIEQIRPDR-QTLMWSATWP 430
GRL D L+ T +LDEADR++DMGF I I E + + + L +SAT P
Sbjct: 172 GRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMP 231
Query: 431 KEVKKLAEDYLG-DYIQIN 484
+V + LG D+ IN
Sbjct: 232 PKVSNVFRGILGTDFKLIN 250
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 46.8 bits (106), Expect = 3e-06
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQVAADFGHTSYVRN 176
GSGKTLA+ +P + H +R D ALV+APTRELA QI Q + +R
Sbjct: 169 GSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRV 223
Query: 177 TCVFGGAPKREQARDLERGVEIVIAT 254
+ GG ++Q R L + +V+AT
Sbjct: 224 MSITGGLAVQKQQRLLNKHPHVVVAT 249
Score = 35.5 bits (78), Expect = 0.007
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Frame = +2
Query: 257 GRLIDFLEKG--TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE----QIRPDRQTLMWS 418
GRL + + T N ++ LVLDEADR+L ++ K++E + RQT ++S
Sbjct: 251 GRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFS 310
Query: 419 ATWPKEVKK 445
AT+ + +++
Sbjct: 311 ATFDEGLQQ 319
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 44.0 bits (99), Expect = 2e-05
Identities = 24/49 (48%), Positives = 30/49 (61%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 149
GSGKTLAY+LP + + G G AL++APTRELA QI V +
Sbjct: 48 GSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
Score = 42.3 bits (95), Expect = 6e-05
Identities = 18/37 (48%), Positives = 28/37 (75%)
Frame = +2
Query: 314 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAT 424
L+LDEAD ++DMGF+ ++ II Q+ R+T ++SAT
Sbjct: 158 LILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSAT 194
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 43.6 bits (98), Expect = 3e-05
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 140
GSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 61 GSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +2
Query: 260 RLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEV 439
R + + G L + +LV+DEAD ML G+ ++ + + Q+ + SAT K +
Sbjct: 150 RCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNI 209
Query: 440 KKL 448
L
Sbjct: 210 ASL 212
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 42.3 bits (95), Expect = 6e-05
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATWPK 433
G ++D +++ + + VLDEAD MLD G Q +I + + Q +++SAT+ +
Sbjct: 239 GTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSE 298
Query: 434 EVKKLAEDYLGDYIQINIGSLQLS 505
V+K AE + + +I + + +LS
Sbjct: 299 RVEKYAERFAPNANEIRLKTEELS 322
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 173
G+GKT A+ L + ++ P P A+ LAP+RELA+QI V + G + V+
Sbjct: 163 GTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATWPK 433
GRL + + + + VLDE D++L+ + I+++ P +Q +M+SAT
Sbjct: 182 GRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSN 241
Query: 434 EVKKLAEDYLGDYIQINI 487
E++ + + ++ + ++I +
Sbjct: 242 EIRPICKKFMQNPLEIYV 259
Score = 35.5 bits (78), Expect = 0.007
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVAADFG-HTSYVRN 176
G GKT ++L + I P+ DG ++ LVL TRELA QI+ A F + VR
Sbjct: 98 GMGKTAVFVLSTLQQIE---PV---DGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRT 151
Query: 177 TCVFGG---APKREQARDLERGVEIVIAT 254
+GG E +D + IV+AT
Sbjct: 152 AVFYGGINIKQDMEAFKDKSKSPHIVVAT 180
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 39.1 bits (87), Expect = 6e-04
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +2
Query: 257 GRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 388
GRL+D + + +LQ Y+V+DEADR+LD F+ + ++ +I
Sbjct: 269 GRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEI 313
Score = 31.9 bits (69), Expect = 0.088
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 131
GSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 183 GSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 38.7 bits (86), Expect = 8e-04
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +2
Query: 260 RLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR-QTLMWSATWPKE 436
RL+ ++ G + ++ + V+DEADR+ + GF Q I+ ++SAT P
Sbjct: 176 RLVQAIQTGLS-FEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSR 234
Query: 437 VKKLAEDYLGDYIQINIG 490
V++LA+ D I+I +G
Sbjct: 235 VEELAKVVTVDPIRIIVG 252
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/47 (42%), Positives = 29/47 (61%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 143
GSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 93 GSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 29.9 bits (64), Expect = 0.36
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 131
G GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1216 GGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 29.9 bits (64), Expect = 0.36
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 131
G GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1216 GGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 84 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 227
PI ++ +P E+ ++V D Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Frame = +2
Query: 2 GFRQNVGLHLASHC-------AHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRFW 154
GF + G + HC H++ AY E F Y R++T + C R W
Sbjct: 33 GFSCSTGEKIFEHCYRDNINEKHREAAAYGEAIRQVAFSKD-YSRMATVSEDKCLRLW 89
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 377 IEQIRPDRQTLMWSATWPKEVKKLAED 457
I + R +R TL S +P+E K L+ED
Sbjct: 268 IRKKRSERDTLNVSTEFPEETKDLSED 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,628
Number of Sequences: 5004
Number of extensions: 60642
Number of successful extensions: 244
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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